Pinned Repositories
RSCUcaller
Program in R for calculating RSCU.
transgenomes
A tool for analyzing transfers between genomes
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
GCE
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be used to design the sequencing strategy.
IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
JACUSA2
New version of JACUSA -> 2.0
lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
learning_random_forest
Notes and code for learning Random Forests
LIQA
Long-read Isoform Quantification and Analysis
lr2rmats
Long read to rMATS
Mordziarz's Repositories
Mordziarz/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Mordziarz/GCE
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be used to design the sequencing strategy.
Mordziarz/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Mordziarz/JACUSA2
New version of JACUSA -> 2.0
Mordziarz/lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Mordziarz/learning_random_forest
Notes and code for learning Random Forests
Mordziarz/LIQA
Long-read Isoform Quantification and Analysis
Mordziarz/lr2rmats
Long read to rMATS
Mordziarz/nanotail
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Mordziarz/ninetails
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
Mordziarz/PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
Mordziarz/RSCUcaller
Program in R for calculating RSCU.
Mordziarz/TAPAS
Mordziarz/Test
Mordziarz/transgenomes
A tool for analyzing transfers between genomes
Mordziarz/wf-pore-c
Mordziarz/wf-transcriptomes