Moseley Bioinformatics and Systems Biology Lab
We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.
University of Kentucky
Pinned Repositories
academic_tracker
Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.
ctfile
Parser for chemical table file (CTfile) a family of text-based chemical file formats (e.g. Molfile, SDfile) that describe molecules and chemical reactions.
GOcats
A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts
ICIKendallTau
Information-Content-Informed Kendall-tau in R
jpredapi
Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server
kegg_pull
Package that facilitates pulling database entries from KEGG via its REST API
MESSES
MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.
mwtab
The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.
pdb_eda
A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank
visualizationQualityControl
Visualization methods for omics dataset quality control
Moseley Bioinformatics and Systems Biology Lab's Repositories
MoseleyBioinformaticsLab/academic_tracker
Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.
MoseleyBioinformaticsLab/mwtab
The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.
MoseleyBioinformaticsLab/pdb_eda
A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank
MoseleyBioinformaticsLab/visualizationQualityControl
Visualization methods for omics dataset quality control
MoseleyBioinformaticsLab/kegg_pull
Package that facilitates pulling database entries from KEGG via its REST API
MoseleyBioinformaticsLab/ctfile
Parser for chemical table file (CTfile) a family of text-based chemical file formats (e.g. Molfile, SDfile) that describe molecules and chemical reactions.
MoseleyBioinformaticsLab/GOcats
A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts
MoseleyBioinformaticsLab/ICIKendallTau
Information-Content-Informed Kendall-tau in R
MoseleyBioinformaticsLab/nmrstarlib
The nmrstarlib package is a Python library that facilitates reading and writing NMR-STAR formatted files.
MoseleyBioinformaticsLab/gpu_tracker
Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.
MoseleyBioinformaticsLab/mwFileStatusWebsite
Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.
MoseleyBioinformaticsLab/categoryCompare2
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
MoseleyBioinformaticsLab/icikt
MoseleyBioinformaticsLab/LabSystemStatus
Contains files describing the current status of lab computers and services.
MoseleyBioinformaticsLab/MESSES
MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.
MoseleyBioinformaticsLab/moiety_modeling
Moiety Modeling implemented in Python
MoseleyBioinformaticsLab/ScanCentricPeakCharacterization
R package for scan-centric, frequency based peak characterization of mass spectrometry
MoseleyBioinformaticsLab/conwell-manuscript.ChronicPancreatitisUrineMetabolomics
MoseleyBioinformaticsLab/diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
MoseleyBioinformaticsLab/FTMS.peakCharacterization
MoseleyBioinformaticsLab/li.ntkoldlrkoLipidomics
MoseleyBioinformaticsLab/manuscript.ICIKendallTau
MoseleyBioinformaticsLab/manuscript.peakCharacterization
MoseleyBioinformaticsLab/manuscript.subsamplingCorrelation
how much of features / samples do we need to recreate full data correlations
MoseleyBioinformaticsLab/md_harmonize
MoseleyBioinformaticsLab/miagis
Generate and validate GIS metadata.
MoseleyBioinformaticsLab/moseleybioinformaticslab.r-universe.dev
maintaining the information for r-universe
MoseleyBioinformaticsLab/SDAMS
Fork of: A Two-Part Semi-Parametric Model for Metabolomics and Proteomics Data
MoseleyBioinformaticsLab/smirfeTools
MoseleyBioinformaticsLab/STRINGDatabaseManipulation