minc_displacement doesn't document what it's for
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gdevenyi commented
Help is a bit sparse:
Command-specific options:
General options:
-verbose: print out extra information
-clobber: clobber existing files
Generic options for all commands:
-help: Print summary of command-line options and abort
-version: Print version number of program and exit
Usage: minc_displacement [options] input.mnc input.xfm output_grid.mnc
minc_displacement -help
It looks to me based on reading the code, it creates a volume like "input.mnc" then reads in an xfm, and creates a combined grid transform based on the result of the total evaluation.
I see it also "keeps the displacement in the three cardinal directions" by taking a difference between (location?) of the original voxel and the new voxel? Is that correct?