Mouse-Imaging-Centre/minc-stuffs

Issues

• voxel_vote produces broken voted file for ultra-high res unsigned-int label files

  #49 opened 3 years ago by gdevenyi
  5

• voxel_vote is slow

  #50 opened 3 years ago by bcdarwin
  1

• Files outputted from voxel_vote aren't compressed

  #48 opened 4 years ago by gdevenyi
  1

• add Python version check to install

  #47 opened 5 years ago by bcdarwin
  0

• setup.py broken in 0.1.25

  #46 opened 5 years ago by maximedieudonne
  2

• rotational_minctracc .py has a numeric type comparison error when comparing world co-ordinates

  #45 opened 5 years ago by dorkylever
  1

• Linking to existing HDF5

  #44 opened 5 years ago
  6

• rotational_mintracc crashes if run without a mask

  #43 opened 6 years ago by gdevenyi
  9

• Pull in https://github.com/jan-scholz/minc-scripts/tree/develop?

  #34 opened 6 years ago by gdevenyi
  1

• Fix vtk_meshconverter before release

  #42 opened 6 years ago by cfhammill
  7

• memory leak in rotational minctracc

  #41 opened 6 years ago by bcdarwin
  0

• rename --temp-folder in compute_determinant.py

  #40 opened 6 years ago by cfhammill
  4

• Compute_determinant.py should generate a fresh temp folder

  #39 opened 6 years ago by cfhammill
  6

• rotational minctracc takes too long

  #38 opened 8 years ago by bcdarwin
  9

• cythonize TFCE

  #35 opened 7 years ago by bcdarwin
  1

• TFCE sums negative values as positives

  #30 opened 7 years ago by cfhammill
  0

• Tab/space indentation problem volumes_from_labels_only

  #37 opened 8 years ago by cfhammill
  1

• pmincaverage uses too much memory to run?

  #36 opened 8 years ago by bcdarwin
  0

• remove cython dependency?

  #25 opened 9 years ago by bcdarwin
  2

• INSTALL file uninformative

  #32 opened 8 years ago by cfhammill
  0

• xfm2tag unsafely assumes image and mask coordinates are the same

  #29 opened 8 years ago by bcdarwin
  1

• make/configure fails on a static hdf5 library (version 1.8.11)

  #7 opened 8 years ago by mcvaneede
  2

• setup.py broken in 0.1.15

  #28 opened 8 years ago by gdevenyi
  3

• Better usage messages for voxel_vote

  #11 opened 9 years ago by bcdarwin
  2

• create -copy_header flag for pmincaverage analogous to mincaverage

  #27 opened 9 years ago by mcvaneede
  0

• produce same output type as input type (pmincaverage)

  #26 opened 9 years ago by mcvaneede
  0

• Should voxel voting work on a single file?

  #24 opened 9 years ago by bcdarwin
  3

• minc_displacement doesn't document what it's for

  #21 opened 9 years ago by gdevenyi
  0

• rotational_minctracc.py doesn't check shell exit codes

  #19 opened 9 years ago by bcdarwin
  1

• rotational_minctracc.py should scale simplex to subject resolution

  #20 opened 9 years ago by mcvaneede
  1

• Deal with compression and multiprocessing in pmincaverage

  #18 opened 9 years ago by mcvaneede
  3

• replace os.system calls with subprocess calls

  #17 opened 9 years ago by mcvaneede
  0

• minc_displacement ignores dimension order

  #16 opened 9 years ago by mcvaneede
  0

• bayes_intensity_update missing from install

  #15 opened 10 years ago by gdevenyi
  0

• Incorrect vtk_meshconvert.py path specified in setup.py

  #14 opened 10 years ago by gdevenyi
  2

• minc_label_ops is hardcoded to work with unsigned short files

  #13 opened 10 years ago by mcvaneede
  0

• minc_label_ops: allow arbitrary order of command line arguments

  #12 opened 10 years ago by beierman
  1

• Verify that tools respect $TMPDIR

  #10 opened 10 years ago by bcdarwin
  0

• Add an atlas_to_atlas and a mouse_to_mouse script to the repository

  #9 opened 10 years ago by mcvaneede
  0

• --convert in minc_label_ops should probably be the default?

  #8 opened 10 years ago by mcvaneede
  0

• minc-stuffs-0.1.4 needs import numpy and include_dirs=[numpy.get_include()]

  #6 opened 10 years ago by gdevenyi
  2

• ubyte type for atlases - compute_values_across_segmentation reads in a max of 255 values for any provided atlas

  #1 opened 10 years ago by mcvaneede
  0

• voxel_vote does not produce proper label files

  #2 opened 10 years ago by mcvaneede
  0

• abilitiy to add multiple files together as a label file (minc_label_ops)

  #3 opened 11 years ago by mcvaneede
  0