dorkylever
PhD Candidate within the Arkell Group - John Curtin School of Medical Research (JCSMR)
The Australian National UniversityJohn Curtin School of Medical Research
Pinned Repositories
Ark_Pydpiper
Repository for Image Processing and Configuration Settings for Pydpiper Analysis for the Arkell Group
Ark_Vol_Warper_v1
Code used within the Arkell lab that warps a provided single organ mask/label to orientated uCT scans of 12.5 dpc embryos and performs basic volume calculations
ASMR_Poster_Information
Detailed Information of methods used (including code), links to dataset and literature cited
BQ_radiomics
radiomics standalone for BQ
embflow
flashback_recorder_instructions
A description of how to install and use Flashback Express Recorder
Geneious-Annotation-to-BED-Converter
Converts Geneious annotations saved as a .csv file into a .BED formatted tsv file. Code will only work from directories within the Arkell Lab network.
LAMA
Automatic phenotyping tool for 3D images
Mouse_SNP_Analysis_HPE
SNP_Analysis
LAMA
Automatic phenotyping tool for 3D images
dorkylever's Repositories
dorkylever/Ark_Pydpiper
Repository for Image Processing and Configuration Settings for Pydpiper Analysis for the Arkell Group
dorkylever/Ark_Vol_Warper_v1
Code used within the Arkell lab that warps a provided single organ mask/label to orientated uCT scans of 12.5 dpc embryos and performs basic volume calculations
dorkylever/ASMR_Poster_Information
Detailed Information of methods used (including code), links to dataset and literature cited
dorkylever/BQ_radiomics
radiomics standalone for BQ
dorkylever/embflow
dorkylever/flashback_recorder_instructions
A description of how to install and use Flashback Express Recorder
dorkylever/Geneious-Annotation-to-BED-Converter
Converts Geneious annotations saved as a .csv file into a .BED formatted tsv file. Code will only work from directories within the Arkell Lab network.
dorkylever/Honours_Thesis
Honours thesis completed within the Arkell laboratory 2018.
dorkylever/LAMA
Automatic phenotyping tool for 3D images
dorkylever/Mouse_SNP_Analysis_HPE
SNP_Analysis
dorkylever/minc-toolkit-v2
Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
dorkylever/MiSimulator
Code developed within the Arkell laboratory to simulate various breeding scenarios within the Australian National University
dorkylever/MONAILabel
MONAI Label is an intelligent open source image labeling and learning tool.
dorkylever/pydpiper
Python code for flexible pipeline control
dorkylever/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
dorkylever/top_secret
Top secret for Happy Hour
dorkylever/vpv
Volumetric viewer
dorkylever/ZIC2-3-UTR-CRISPR-Cpf1
Files used to determine the optimal sgRNAs for CRISPR-Cpf1 mutagenesis to exclude the ARE or introduce one of the six HPE SNVs
dorkylever/ZIC2-3-UTR-SINE-Element-Analysis
Files used in determining the presence of a SINE element within the ZIC2 3'UTR