Pinned Repositories
ANTs
Advanced Normalization Tools (ANTs)
bio-acai
A repo for the Acai project, run by the Toronto Haskell group.
bionix
Functional highly reproducible bioinformatics pipelines
bistro
A library to build and execute typed scientific workflows
critbit
A Haskell implementation of crit-bit trees.
dhall-docker-compose
:dash: A library for writing Docker Compose files in Dhall.
dmca
Repository with text of DMCA takedown notices as received. GitHub does not endorse or adopt any assertion contained in the following notices. Users identified in the notices are presumed innocent until proven guilty. Additional information about our DMCA policy can be found at
EBTKS
MINC EBTKS library
lenses
Elegant Data Manipulation with Lenses
nixpkgs
Nix Packages collection & NixOS
bcdarwin's Repositories
bcdarwin/ANTs
Advanced Normalization Tools (ANTs)
bcdarwin/bionix
Functional highly reproducible bioinformatics pipelines
bcdarwin/bistro
A library to build and execute typed scientific workflows
bcdarwin/dhall-docker-compose
:dash: A library for writing Docker Compose files in Dhall.
bcdarwin/dmca
Repository with text of DMCA takedown notices as received. GitHub does not endorse or adopt any assertion contained in the following notices. Users identified in the notices are presumed innocent until proven guilty. Additional information about our DMCA policy can be found at
bcdarwin/EBTKS
MINC EBTKS library
bcdarwin/eigen
Owl's OCaml Interface to Eigen3 C++ Library
bcdarwin/fastai_scans
Fastai extension to work with 3d medical images
bcdarwin/generate_deformation_fields
Given an input Jacobian determinant, this code will generate a deformation field that produces that Jacobian field. (Made for MINC format files)
bcdarwin/interface_meta
A convenient way to expose an extensible API with enforced method signatures and consistent documentation.
bcdarwin/lenses
R lenses
bcdarwin/libminc
libminc is the core library and API of the MINC toolkit
bcdarwin/minc-toolkit-containers
Making containers with minc-toolkit
bcdarwin/minc-toolkit-extras
Extra miscellaneous scripts for minc-toolkit
bcdarwin/minc-widgets
Collection of MINC widgets, perl and shell scripts
bcdarwin/mne-python
MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
bcdarwin/mni_autoreg
MINC mni_autoreg
bcdarwin/mrtrix3
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
bcdarwin/nibabel
Python package to access a cacophony of neuro-imaging file formats
bcdarwin/nix.dev
An opinionated guide for developers wanting to get things done with the Nix ecosystem.
bcdarwin/nixpkgs
Nix Packages collection
bcdarwin/NNlib.jl
Neural Network primitives with multiple backends
bcdarwin/owl
Owl is an OCaml numerical library: dense and sparse matrix, linear algebra, regressions, maths and stats functions.
bcdarwin/pydpiper
Python code for flexible pipeline control
bcdarwin/pyminc
A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch
bcdarwin/qbatch
bcdarwin/simple-twitter
A bare-bones Twitter clone implemented in a single file
bcdarwin/spinalcordtoolbox
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
bcdarwin/StructuralCovariance
R and Python code for working with structural covariance networks
bcdarwin/torchio
Tools for loading, augmenting and writing 3D medical images with PyTorch.