[INSTALL] "OSError: could not get source code" with GUI
Closed this issue · 2 comments
mayishazn commented
Install problem
Since I couldnt edit missegmented cells with my current installation, I created a fresh environment and installed cellpose[gui]. Then I just opened an image and tried to run cyto3 with the gui. It fails to segment and says "OSError: could not get source code"
I attach relevant details.
Environment info
env.txt
Run log
cmd.txt
mrariden commented
It looks like some of the torch library didn't install or get correctly linked. Can you do something like
conda create -n <new env name> # make sure to either completely remove an existing environment first, or choose a new name
conda activate <env name>
pip install cellpose
pip install cellpose[gui]
And if that doesn't work, install pytorch manually. You can get the command for your OS/install here: https://pytorch.org/ under 'install pytorch'
carsen-stringer commented
closing due to inactivity