Pinned Repositories
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
Kilosort
Fast spike sorting with drift correction for up to a thousand channels
pykilosort
WIP: Python port of Kilosort2
rastermap
a visualization method for neural data
stringer-et-al-2019
paper figure code
stringer-pachitariu-et-al-2018a
Recordings of 10k neurons during spontaneous behaviors
stringer-pachitariu-et-al-2018b
Responses of 10,000 neurons to 2,800 natural images
suite2p
cell detection in calcium imaging recordings
MouseLand's Repositories
MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
MouseLand/Kilosort
Fast spike sorting with drift correction for up to a thousand channels
MouseLand/suite2p
cell detection in calcium imaging recordings
MouseLand/rastermap
a visualization method for neural data
MouseLand/facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
MouseLand/stringer-pachitariu-et-al-2018b
Responses of 10,000 neurons to 2,800 natural images
MouseLand/pykilosort
WIP: Python port of Kilosort2
MouseLand/stringer-pachitariu-et-al-2018a
Recordings of 10k neurons during spontaneous behaviors
MouseLand/cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
MouseLand/stringer-et-al-2019
paper figure code
MouseLand/neuropop
analysis tools for large-scale neural recordings
MouseLand/receptivefield-explorer
GUI to compute and explore receptive fields, primarily from calcium imaging recordings
MouseLand/EnsemblePursuit
MouseLand/pachitariu-et-al-2018a
Benchmarking spike deconvolution without ephys
MouseLand/steinmetz2019_NMA
MouseLand/course-materials
MouseLand/cellpose_web
code for cellpose website
MouseLand/facemap-napari
napari plugin for facemap (www.github.com/mouseland/facemap) for processing behavioral data
MouseLand/kesa-et-al-2019