MouseLand/suite2p

Issues

• BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

  #1150 opened 3 months ago by limserenahansol
  0

• New s2p version cannot handle lists of h5 files

  #1149 opened 3 months ago by oterocoronel
  0

• BUG: Bruker input using Ch2 only.

  #1148 opened 3 months ago by LABell2842
  0

• BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

  #1147 opened 3 months ago by mmzinn12
  0

• ROI detection wrapper modifies the input images and consequently, can't detect ROIs

  #1145 opened 3 months ago by harinisuri
  0

• Registration metrics do not exclude bad frames

  #1144 opened 4 months ago by samupicard
  1

• BUG: Merge ROI not working

  #1143 opened 4 months ago by ycYiwei
  0

• Error in GUI - Space in Users name

  #1141 opened 4 months ago by AMlsct
  1

• Menu bar in GUI is invisible

  #1142 opened 4 months ago by Mengya-W
  0

• BUG: Cannot load suite2p image into suite2p UI. Divide by 0 error

  #1140 opened 4 months ago by arielleleon
  0

• BUG: <Please write a comprehensive title after the 'BUG: ' prefix> Significantly higher fluorescence values in Suite2p in images collected thru Scanimage and saved in imageJ

  #1139 opened 5 months ago by niraulasuraj9
  0

• BUG: sbx_to_binary computes nframes incorrectly with multiple channels if longer than batch_size frames

  #1109 opened 9 months ago by ethanbb
  2

• BUG: ROI coordinates shifted in y-axis with respect to manually-drawn Ellipse

  #1125 opened 7 months ago by yzerlaut
  1

• BUG: Suite2P gui not saving update to NWB file

  #1138 opened 5 months ago by JohnStout
  0

• FEATURE: ROI registration

  #1115 opened 9 months ago by eunjoy21
  1

• BUG: Can't manually label ROIs on the mean image of a second channel, only over the mean image of the first channel

  #1135 opened 5 months ago by ShayMeAs
  0

• BUG: Value error after manual labelling extraction

  #1127 opened 7 months ago by Nique19351
  1

• Issues with installation of suite2p

  #1128 opened 6 months ago by GiangTranHU
  8

• BUG: UnboundLocalError: local variable 'meanImg_chan2' referenced before assignment

  #1133 opened 6 months ago by GiangTranHU
  0

• BUG: Large OME.TIFF files not registering

  #1131 opened 6 months ago by nhanford199
  0

• BUG: Unable to visualize selected cells for rastermap plots

  #1130 opened 6 months ago by C57B6J
  0

• ValueError: operands could not be broadcast together with shapes

  #1123 opened 6 months ago by C57B6J
  1

• BUG: Functional channel not being assigned to channel 2

  #1126 opened 7 months ago by jordanfarrell
  0

• BUG: 1P masks not aligning, issue of average image?

  #1124 opened 7 months ago by jackbrougher
  0

• functional segmentation of GCaMP8m

  #1120 opened 8 months ago by ftomaska
  0

• Tiff ValueError: the total number of frames should be at least 50. RAW to TIFF conversion in Fiji

  #1095 opened 10 months ago by rsymzk
  2

• FEATURE: operating extraction on cropped region

  #1098 opened 8 months ago by jingxuanf0214
  2

• BUG: manual ROI extraction error

  #1084 opened 8 months ago by EunJungHwang
  2

• Imaging with Fluo-4

  #1118 opened 8 months ago by marytunun
  0

• FEATURE: ROI registration and interpretation of

  #1116 opened 8 months ago by eunjoy21
  0

• BUG: GUI, error ROI detection cannot convert float infinity to integer

  #1090 opened 10 months ago by klab-buffalo
  4

• BUG: Partial analysis on subset of data does not work

  #1113 opened 9 months ago by knowblesse
  0

• BUG: Can not handle an h5 file with 5D data structure

  #1111 opened 9 months ago by knowblesse
  3

• DOC: some readthedocs.io links to API are broken

  #1110 opened 9 months ago by neurochatter
  0

• BUG: model_path() takes from 1 to 2 positional arguments but 3 were given

  #1108 opened 9 months ago by lea-danics
  3

• Don't show ROIS in main screen

  #1104 opened 9 months ago by KKroba
  3

• BUG: not able to save data.bin file after registration through colab - but same thing works through GUI

  #1089 opened 10 months ago by julia-napoli
  7

• BUG: error when running suite2p

  #1103 opened 10 months ago by Monodia97
  2

• Error when run ops file

  #1105 opened 10 months ago by KKroba
  4

• qt.qpa.plugin error after installation (no root privileges)

  #1107 opened 10 months ago by batuhanerkat
  0

• BUG: error in anatomical detection using cellpose 3

  #1101 opened 10 months ago by nguyemi5
  1

• TypeError: model_path() in rungui.py on newly installed suite2p

  #1093 opened 10 months ago by IreneP19
  5

• Deconvolution for RGECO neuronal signal

  #1099 opened 10 months ago by ZiTao956
  0

• Bug: Merge ROIs duplicates

  #1097 opened 10 months ago by sdaste
  0

• Installing using pip on source results in OSError:...libScanImageTiffReaderAPI.so: cannot open shared object file: No such file or directory

  #1096 opened 10 months ago by paulgarias
  0

• BUG: Unable to extract dendritic ROIs

  #1094 opened 10 months ago by seethakris
  0

• RECOMMENDATION: Processing multi plane images with different types of structures

  #1092 opened 10 months ago by GergelyTuri
  0

• BUG: Access to the DATA.bin file is denied

  #1088 opened a year ago by mkzhou00
  0

• BUG: Error with registration/ROI extraction

  #1087 opened a year ago by kyesther00
  0

• BUG: creating combined view gives rise to error when ignore_flyback>0

  #1082 opened a year ago by just-meng
  0