BUG: Unable to visualize selected cells for rastermap plots
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Describe the issue:
When I select a cell and either ctrl+v or select "visualize selected cells" from the visualizations menu, nothing happens. Instead, I get the following error:
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\menus.py", line 124, in
parent.visualizations.triggered.connect(lambda: vis_window(parent))
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\menus.py", line 193, in vis_window
parent.VW = visualize.VisWindow(parent)
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\visualize.py", line 341, in init
colormap = cm.get_cmap("gray_r")
AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
I tried running pip install --upgrade matplotlib but I get the same error with the upgraded version (3.8).
I should add (because I assume it is related) that the L: corr with 1D var, bin=^^^ and the M: rastermap/custom are greyed out and cannot be selected within the GUI.
Reproduce the code example:
ctrl+v or select "visualize selected cells"
Error message:
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\menus.py", line 124, in <lambda>
parent.visualizations.triggered.connect(lambda: vis_window(parent))
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\menus.py", line 193, in vis_window
parent.VW = visualize.VisWindow(parent)
File "C:\ProgramData\anaconda3\envs\suite2p\lib\site-packages\suite2p\gui\visualize.py", line 341, in __init__
colormap = cm.get_cmap("gray_r")
AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
Version information:
suite2p v0.14.4
Context for the issue:
I am attempting to generate rasterplots to examine correlated activity of cell populations to be able to plan my next experiments.