MouseLand/cellpose

Help segmenting bright field images

Bassetyabrag opened this issue · 2 comments

Uploading screen9-amoeba-4h-emdm_A1_N_Bf_Processed_1b9605cd-1c68-4ae2-9365-c17ad83229a4.jpg…
Hello!
I am trying to segment brightfield images, such as the one I provided. The problem I am facing is that the cellpose 3 is not able to segment these images correctly. does anyone have any kind of advice on how to segment these kinds of images?
Thanks for the help.

you may need to try training a model if the livecell models aren't working for you, check out our info on Cellpose2: https://github.com/MouseLand/cellpose?tab=readme-ov-file#star2-v20-april-2022-star2