MueFab/genie

Issues

• Compress mgrec to mgb is too slow and consume too much space

  #64 opened 2 years ago
  1

• Installation problems

  #46 opened 3 years ago
  0

• Implement recombination of read pairs

  #34 opened 3 years ago
  0

• Feature request: splice coding

  #33 opened 3 years ago
  0

• Check whether Valgrind checks are performed on the CI system

  #32 opened 3 years ago
  1

• Finish Software Requirements Specification

  #31 opened 3 years ago
  0

• Genie crashes when encoding "large" SAM files (> 10 GB)

  #30 opened 3 years ago
  0

• Decoding of the mmtype descriptor with the MPEG-G reference software

  #29 opened 3 years ago
  1

• Improve documentation on BAM usage

  #28 opened 4 years ago
  3

• Performance issue with BinarizationParameters class

  #27 opened 4 years ago
  0

• Compilation Fails on FreeBSD and Termux/Android (clang issue?)

  #26 opened 4 years ago
  2

• Set up conformance tests

  #25 opened 3 years ago
  1

• Re-enable unit testing system

  #24 opened 3 years ago
  0

• IUPAC support

  #23 opened 4 years ago
  1

• "Sophisticated" classification functionality

  #22 opened 3 years ago
  1

• Implement file format functionality

  #21 opened 4 years ago
  0

• Spring/BooPHF not compilable on windows

  #20 opened 4 years ago
  4

• Properly set up CI

  #19 opened 4 years ago
  1

• Merge bit input streams in gabac and util library

  #18 opened 4 years ago
  0

• Add tests with large files to CI system

  #17 opened 3 years ago
  1

• Double-check of QV codebook implementation

  #16 opened 3 years ago
  1

• Genie gets stuck when decompressing unaligned data mgb to mgrec format

  #15 opened 4 years ago
  2

• Compilation error "non-constexpr constructor cannot be used in a constant expression"

  #14 opened 4 years ago
  2

• Segfault when decompressing paired end file to fastq, but only one fastq provided

  #13 opened 4 years ago
  4

• Local assembly: possible performance improvement

  #12 opened 4 years ago
  0

• Roundtrip: Decompressed sam file is not ordered anymore because of classification

  #11 opened 4 years ago
  0

• Tools for mgb manipulation

  #10 opened 3 years ago
  1

• Fastq-Exporter: Add support for mixed single/paired end data

  #9 opened 4 years ago
  1

• Regarding conversion of SAM to MPEG-G

  #6 opened 5 years ago
  3

• Check adaptive entropy coding

  #5 opened 5 years ago
  0