Pinned Repositories
AgingMouseBrainCCInx
Predicted cell-cell interactions of the aging mouse brain
BEAVR
BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
BingleSeq
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
brain-heatmap
Create heatmaps for the mouse brain and for the human brain
BRC_SupernumeraryTooth_Gui_PID_19
RNA-Seq data from mice to understanding the genetics of supernumerary tooth formation.
CDSeq_R_Package
CDSeq R Package
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
CellProfileLibrary
cloudimg
My picture in Typora
MusculusMus's Repositories
MusculusMus/BEAVR
BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
MusculusMus/BingleSeq
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
MusculusMus/BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
MusculusMus/CDSeq_R_Package
CDSeq R Package
MusculusMus/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
MusculusMus/CellProfileLibrary
MusculusMus/cloudimg
My picture in Typora
MusculusMus/DataVisualization
Data Visualization by R
MusculusMus/ddCt_QuantStudio3
A R/Bioconductor package to perform qRT-PCR data analysis with the ddCt method
MusculusMus/GenomicDistributions
Calculate and plot distributions of genomic ranges
MusculusMus/GenomicSuperSignature
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
MusculusMus/ggseg
Plotting tool for brain atlases, in ggplot
MusculusMus/ggseg3d
ggseg3d R package for cisualising brain atlases through plotly
MusculusMus/GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
MusculusMus/lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
MusculusMus/manuscript-template-rstudio
Quarto
MusculusMus/MetaTX.1.0
MusculusMus/MusculusMus
Config files for my GitHub profile.
MusculusMus/ontoProc
MusculusMus/pptxtemplates
Provide themed powerpoint presentation templates to rmarkdown
MusculusMus/RNASeq_workshop
Materials for the RNAseq Lab and Data Analysis Workshop
MusculusMus/scRNA-seq_Harvard_Bioinfo_training
MusculusMus/scRNA-seq_online
MusculusMus/Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
MusculusMus/SpatialFeatureExperiment
Extension of SpatialExperiment with sf
MusculusMus/SpatialOmicsOverlay
Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
MusculusMus/stereoscope
Spatial mapping of cell types by integration of transcriptomics data
MusculusMus/TrendCatcher
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
MusculusMus/TRESS
Toobox for RNA Methylation Sequencing Analysis
MusculusMus/velocyto.R
RNA velocity estimation in R