Pinned Repositories
alphafold3
AlphaFold 3 inference pipeline.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
broad-prod-wgs-germline-snps-indels
Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
CHM13
The complete sequence of a human genome
dragonstar2019
Methylation_notes
Notes on DNA methylation analysis
T2T_Encode_Analysis
Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly
Musketeer-D's Repositories
Musketeer-D/T2T_Encode_Analysis
Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly
Musketeer-D/alphafold3
AlphaFold 3 inference pipeline.
Musketeer-D/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Musketeer-D/awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
Musketeer-D/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Musketeer-D/chip-seq-pipeline2
ENCODE ChIP-seq pipeline
Musketeer-D/CHM13
The complete sequence of a human genome
Musketeer-D/CisTransRegulation
Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
Musketeer-D/daguguguji
《特师文集》——大咕咕咕鸡著
Musketeer-D/deepsignal-plant
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
Musketeer-D/deepTools
Tools to process and analyze deep sequencing data.
Musketeer-D/CS-Notes
:books: 技术面试必备基础知识、Leetcode、计算机操作系统、计算机网络、系统设计
Musketeer-D/deeplearning-biology
A list of deep learning implementations in biology
Musketeer-D/ggsci
🦄 Scientific journal and sci-fi themed color palettes for ggplot2
Musketeer-D/HumanSystemOptimization
健康学习到150岁 - 人体系统调优不完全指南
Musketeer-D/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Musketeer-D/LosslessSwitcher
Automated Apple Music Lossless Sample Rate Switching for Audio Devices on Macs.
Musketeer-D/MACS
MACS -- Model-based Analysis of ChIP-Seq
Musketeer-D/Micro8
Gitbook
Musketeer-D/msfs_teo
mSFS using a teosinte natural population
Musketeer-D/nanopore-methylation-utilities
Musketeer-D/notebooks
路漫漫其修远兮
Musketeer-D/pseudoRef
Make Pseudo-Reference Genome from VCF/BCF
Musketeer-D/pycoMeth
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
Musketeer-D/R_for_Data_Science
Materials for teaching R and tidyverse
Musketeer-D/releases
Musketeer-D/rerio
Research release basecalling models and configurations
Musketeer-D/seqtk
Toolkit for processing sequences in FASTA/Q formats
Musketeer-D/T2T-Epigenetics
Repository for analysis scripts for the T2T Epigenetics manuscript
Musketeer-D/WheatHomoeologExpression