Mye-InfoBank
COST Action CA20117 - Mye-InfoBank is dedicated to converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer.
Pinned Repositories
cellxgene
An interactive explorer for single-cell transcriptomics data
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
downstream-analysis
scHPL
scib
Benchmarking analysis of data integration tools
scRAFIKI
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
SIMBA-Downstream
This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.
SIMBA-QC
This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.
Mye-InfoBank's Repositories
Mye-InfoBank/scRAFIKI
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
Mye-InfoBank/cellxgene
An interactive explorer for single-cell transcriptomics data
Mye-InfoBank/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Mye-InfoBank/downstream-analysis
Mye-InfoBank/scHPL
Mye-InfoBank/scib
Benchmarking analysis of data integration tools
Mye-InfoBank/SIMBA-Downstream
This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.
Mye-InfoBank/SIMBA-QC
This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.