NAL-i5K/tripal_eutils

Issues

• PHP deprecation

  #261 opened a year ago by dsenalik
  1

• tripal_eutils does not have a version number in /admin/reports/updates

  #258 opened 2 years ago by dsenalik
  1

• Error if linked records are not yet public

  #256 opened 2 years ago by dsenalik
  1

• PHP8 errors

  #254 opened 2 years ago by dsenalik
  1

• Namespace and functionality conflict with Tripal Analysis Expression

  #233 opened 2 years ago by Ferrisx4
  2

• Remove dependency on tripal_manage_analyses module

  #248 opened 2 years ago by dsenalik
  1

• Incorrect parameters passed to tripal_report_error()

  #228 opened 2 years ago by dsenalik
  8

• contacts are created but are not linked to projects

  #245 opened 2 years ago by dsenalik
  2

• Incorrect analysis links generated if more than one assembly loaded in one drush run

  #226 opened 2 years ago by dsenalik
  1

• Assembly with a missing "Assembly method" field triggers a "Not null violation" error

  #230 opened 2 years ago by dsenalik
  1

• Invalid name syntax error

  #240 opened 2 years ago by dsenalik
  0

• Feature Request - Batch import

  #231 opened 4 years ago by Ferrisx4
  1

• Allow loading more than one record at a time

  #241 opened 2 years ago by dsenalik
  1

• FTP Timeouts

  #232 opened 2 years ago by Ferrisx4
  1

• Error if CV term does not exist

  #243 opened 2 years ago by dsenalik
  2

• NCBI Data loader warning

  #214 opened 4 years ago by Tenncp
  4

• Undefined table: arraydesign

  #221 opened 5 years ago by Ferrisx4
  4

• API Key Validation

  #217 opened 5 years ago by Ferrisx4
  1

• NCBI data loader execution warning and error

  #218 opened 5 years ago by Tenncp
  0

• require_once() fail to open includes/tripal_eutils_import.form.inc

  #212 opened 5 years ago by Ferrisx4
  0

• EUtilsBioProjectFormatter->formatLinkedRecords($accessions) prints types

  #213 opened 5 years ago by par12005
  2

• can/should we do the cross database searching the way NCBI does

  #209 opened 6 years ago by bradfordcondon
  0

• module rating

  #200 opened 6 years ago by bradfordcondon
  1

• chado API

  #202 opened 6 years ago by bradfordcondon
  2

• list custom tables created in install

  #193 opened 5 years ago by bradfordcondon
  1

• example created records

  #178 opened 5 years ago by bradfordcondon
  2

• create 7.x-1.0 release

  #201 opened 5 years ago by bradfordcondon
  0

• Undeclared dependency: Module requires Chado 1.3

  #210 opened 5 years ago by mpoelchau
  5

• make sure biosample attribute list download is in documentation

  #211 opened 5 years ago by bradfordcondon
  1

• do we need an SRA importer?

  #207 opened 6 years ago by bradfordcondon
  1

• log status to the job console

  #206 opened 6 years ago by bradfordcondon
  2

• tripal importer instead of base form

  #204 opened 6 years ago by bradfordcondon
  0

• Assembly xrefs vs primary accessions vs linked records

  #194 opened 6 years ago by bradfordcondon
  3

• notify admins of pubs attached to project when inserting assembly

  #196 opened 6 years ago by bradfordcondon
  0

• new assembly type

  #197 opened 6 years ago by bradfordcondon
  1

• discrep between formatter and inserted records

  #192 opened 6 years ago by bradfordcondon
  8

• will secondary records have all necessary associations?

  #187 opened 6 years ago by bradfordcondon
  1

• verify primary cross_ref added for each content type

  #179 opened 6 years ago by bradfordcondon
  0

• use the stats instead of report file for EFTP class

  #183 opened 6 years ago by bradfordcondon
  0

• ontology type term: bioproject

  #177 opened 6 years ago by bradfordcondon
  0

• what should we do when we dont know how to link something

  #182 opened 6 years ago by bradfordcondon
  2

• no biosample created when running analysis

  #184 opened 6 years ago by bradfordcondon
  2

• description not always added for biosample

  #180 opened 6 years ago by bradfordcondon
  1

• error creating assembly if no assembly tag on FTP summary

  #175 opened 6 years ago by bradfordcondon
  2

• biosample contact import needs improvement

  #174 opened 6 years ago by bradfordcondon
  1

• exhaustive testing of linked import

  #169 opened 6 years ago by bradfordcondon
  2

• undefined properties

  #170 opened 6 years ago by bradfordcondon
  3

• unable to find UID for some bioprojects

  #171 opened 6 years ago by bradfordcondon
  3

• nonunique long form accessions prevent loading data

  #167 opened 6 years ago by mpoelchau
  2

• error inserting biomaterial when already linked ot project

  #165 opened 6 years ago by bradfordcondon
  0