Prepare VCF and BAM files to be used as input files for PharmVIP. The input file size for PharmVIP is limited to less than 1 GB. This tool is for filtering a VCF file to retain only genotypic data of all pharmacogenes analyzed in Guideline and Pharmacogenes modules, and for filtering a BAM file for analysis of the CYP2D6 gene region as well as the HLA gene region for the HLA module.
- CPIC Genes
- CACNA1S
- CFTR
- CYP2B6
- CYP2C19
- CYP2C9
- CYP2D6
- CYP3A5
- CYP4F2
- DPYD
- G6PD
- IFNL3
- NUDT15
- RYR1
- SLCO1B1
- TPMT
- UGT1A1
- VKORC1
- PGx
- HLA