Pinned Repositories
mlxai-2024-team-bhushan
mlxai-2024-team-saddler
ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams
ncbi-codeathons.github.io
NCBI Codeathons Website
OMOPOmics
Patient 'omics data in OMOP format
SARS2-Variation-Viewer
Variation Analysis and Visualization of SARS-CoV-2 sequences in GenBank
SWIGG
A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
Using-PubMed-MEDLINE-Metadata-to-Generate-Knowledge
vcf-4-population-genomics-team-abdennur
vcf-4-population-genomics-team-hearn
vcf-4-population-genomics-team-park
NCBI-Codeathons's Repositories
NCBI-Codeathons/SWIGG
A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
NCBI-Codeathons/OMOPOmics
Patient 'omics data in OMOP format
NCBI-Codeathons/Identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-single-cell-populations
NCBI-Codeathons/SeqMoid
NCBI-Codeathons/Clouseau
A QC suite for large VCF files
NCBI-Codeathons/Understand-cancer-evolution-through-single-cell-expression-dynamics
NCBI-Codeathons/Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories
Classify your health/medical/life sciences search terms
NCBI-Codeathons/Integrating-multi-omics-data-in-yeast
XXX is a all-inclusive pipeline we developed for multi-omics data analysis. XXX can take genomics, RNA-seq, proteomics and metabolomics data (for yeast) and integrate with Canonical Correlation Analysis and analyze by OPLS-DA for variables driving the differences between samples. Difference driving pathways then can then be visualized through visNetwork. Lastly, follow-up experiment guidance and be yielded through COBRA simulations with Yeast 8 database.
NCBI-Codeathons/Diversifying-the-pipeline-for-identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-sing
NCBI-Codeathons/GWAusage
Genomic Responses to Infectious Disease
NCBI-Codeathons/SARS-CoV-2-host-genes
Characterization of SARS-CoV-2 host genes
NCBI-Codeathons/The_Virus_Index
A Federated Index of Virus Metadata and Hyperdata in Public Repositories
NCBI-Codeathons/Genes-in-the-Hood
Identify antiphage defense systems in the bacterial pangenome
NCBI-Codeathons/single-cell-comparison
NCBI-Codeathons/SLEuth
NCBI-Codeathons/USING-MACHINE-LEARNING-TO-IMPROVE-POST-ACUTE-REHABILITATION-PROCESS-FLOW
NCBI-Codeathons/Assessment-of-log-transformation-and-z-scores-for-scRNA-seq-data-analysis
NCBI-Codeathons/Automating-tools-to-search-and-analyze-large-genome-sequence-repositories
NCBI-Codeathons/DEFINITION-OF-CELL-CYCLE-STATE-IN-LABEL-FREE-IMAGES
NCBI-Codeathons/HOPDARM
NCBI-Codeathons/MONITORING-POST-OPERATIVE-HEAD-NECK-CANCER-PATIENTS-VIA-SELF-POWERED-SMART-INSOLES
NCBI-Codeathons/NOVEL-CLINICAL-PREDICTION-APPROACHES-TO-MANAGING-CARE-FOR-ACUTE-PULMONARY-EMBOLISM-PATIENTS
NCBI-Codeathons/SCANCNV
Creating an awesome tool to perform CNV QC on WES data independent of callers/platform that focuses on confidence and reportability of CNV calls, particularly in clinical data.
NCBI-Codeathons/Taxonomy_Domain_Integration
Making a Domain Map Across Approximate Metagenomic Taxonomy.
NCBI-Codeathons/VirusGraphs3
Solidifying the VirusGraphs Infrastructure for Deployment
NCBI-Codeathons/Evolutionary_Protein_Interaction_Conjecture
NCBI-Codeathons/NGcubed
NCBI-Codeathons/NI
Finding NeoEpitomes in Transcriptomes
NCBI-Codeathons/MetGraphs
Cancer Graphs of Metastases
NCBI-Codeathons/THE-ISOFORM-POTENTIAL-OF-THE-GENOME