https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/DS
A Faster, Better Short-Read Mapper with Hit Chaining. Now with more corn! See the Giraffe folder for details!
https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/Giraffe
Most Genome Annotations can be Imported from gff3 (to ggff!) quite easily! See the annotation folder for details!
https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/annotation
Allele-Specific Expression can be calculated in a lightweight fashion! Grab the workflow in the RNA folder!
https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/RNA
Calculate Mutations In, Outside of, and at Breakpoints of Structural Variants! See the SV folder for Details!
https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/SV/HG002
We Mapped the MHC Region of HG002 to a Graph with Long Reads, Long Reads, 10X and love. Check out the MHC folder!
https://github.com/NCBI-Hackathons/TheHumanPangenome/tree/master/MHC