Pinned Repositories
alview
Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver
annotation-and-image-markup
Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.
catissue-core
caTissue Suite is a modular, open-source, specimen inventory and tracking system.
clinical-trials-search
CTAT-SPLICING
detection of cancer splicing aberrations
gdc-docs
Official repository for GDC User Guides in Markdown format
lexevs
The LexEVS Terminology Service.
lexevs-service
A CTS2 Framework Service Plugin based on LexEVS
national-biomedical-image-archive
The National Biomedical Imaging Archive (NBIA) is a free and open source service and software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable national repository integrating in vivo cancer images with clinical and genomic data. Using role-based security, NBIA provides web-based access to de-identified DICOM images, image markup, annotations, and rich meta data.
pathway-interaction-database
The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.
National Cancer Informatics Program's Repositories
NCIP/gdc-docs
Official repository for GDC User Guides in Markdown format
NCIP/annotation-and-image-markup
Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.
NCIP/lexevs
The LexEVS Terminology Service.
NCIP/CTAT-SPLICING
detection of cancer splicing aberrations
NCIP/catissue-core
caTissue Suite is a modular, open-source, specimen inventory and tracking system.
NCIP/lexevs-service
A CTS2 Framework Service Plugin based on LexEVS
NCIP/nci-metathesaurus-browser
The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus, a biomedical terminology database that maps terms from more than 70 terminology sources into some 1.5 million biomedical concepts.
NCIP/cananolab
caNanoLab is a web-based portal designed to capture nanotechnology data.
NCIP/ctat-metagenomics
NCIP/nci-diff-CDISC
diff specific for CDISC reports
NCIP/nci-term-browser
The NCI Term Browser is a web-based browser that allows users to search all terminologies, value sets and mappings on the LexEVS terminology server, to browse individual sources, and to easily follow the many links that connect them.
NCIP/Trinity_CTAT_galaxy
Files needed for Galaxy tools used to run Trinity_CTAT workflows.
NCIP/caarray
caArray is a web-based application supporting the storage, annotation, and sharing of microarray data.
NCIP/cabio
caBIO (cancer Bioinformatics Infrastructure Objects) is a resource for accessing molecular annotations from curated data sources.
NCIP/caintegrator
caIntegrator brings together clinical, microarray and medical imaging data for integrative data query and analysis.
NCIP/calims
caLIMS is a Laboratory Information Management System (LIMS) that tracks a complete laboratory workflow to generate experimental results for data repositories or data management services.
NCIP/camod
The cancer models database (caMOD) provides information about animal models for human cancer to the public research community.
NCIP/docker-ctat-galaxy
Galaxy Docker build for Trinity CTAT tools
NCIP/lexevs-grid
caGrid Analytical and Data services for LexEVS.
NCIP/lexevs-remote
A remote (RMI) access wrapper around LexEVS.
NCIP/BEMT
Biobank Economic Modeling Tool
NCIP/automation
Created as per request NCI-RITM0065579 as part of SVN to GitHub migration
NCIP/bioconductor
NCIP/bioconductor_v1
NCIP/cadsr-sentinel
The caDSR Sentinel tool allows users to create and manage Alert Definitions for content in the caDSR
NCIP/Cancer-Research-Data-Commons-Framework-Documentation
Repository of documentation and technical artifacts related to the NCI CRDC
NCIP/cbiit-ahp3-software
NCIP/commonlibrary
Created as per request NCI-RITM0065579
NCIP/ctat-genome_guided_reconstruction
Use genome-guided reconstruction of transcripts
NCIP/CTAT_testkit
small testkit for checking CTAT module executions