/Genomic2DTK

Set of genomic interaction analysis tools.

Primary LanguageROtherNOASSERTION

Genomic2DTK

R-CMD-check Codecov test coverage

This package provides a set of functions useful in the analysis of 3D genomic interactions. It includes the import of standard HiC data formats into R and HiC normalisation procedures. The main objective of this package is to improve the visualization and quantification of the analysis of HiC contacts through aggregation.

Installation

Development version is avalaible from GitHub:

remotes::install_github("NChanard/Genomic2DTK")

Documentation

Genomic2DTK