Pinned Repositories
XcalRep
Implementation of cross-calibration and precision analysis for HR-pQCT
Animal-growth-models
This MATLAB script fits either a linear or hyperbolic function to time-series data (e.g., growth data).
ATP-and-ADP-diffusion-and-degradation-model
Mathematical model that describes ATP and ADP release through a cellular membrane injury and subsequent radial diffusion and degradation in the extracellular space.
Calcium-Signal-Analyzer
Calcium signal processing algorithm for automated analysis of intracellular calcium responses
Hallucination-susceptible-Hopfield-network
The Hopfield network, a point attractor network, is modified here to investigate the behavior of the resting state challenged with varying degrees of noise.
Lawson2020
MetaLab
Meta-analysis toolbox for basic research applications. Developed in MATLAB R2016b.
Mikolajewicz-2024
scMiko
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
scPipeline
Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports
NMikolajewicz's Repositories
NMikolajewicz/scMiko
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
NMikolajewicz/MetaLab
Meta-analysis toolbox for basic research applications. Developed in MATLAB R2016b.
NMikolajewicz/scPipeline
Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports
NMikolajewicz/Lawson2020
NMikolajewicz/Hallucination-susceptible-Hopfield-network
The Hopfield network, a point attractor network, is modified here to investigate the behavior of the resting state challenged with varying degrees of noise.
NMikolajewicz/Mikolajewicz-2024
NMikolajewicz/Animal-growth-models
This MATLAB script fits either a linear or hyperbolic function to time-series data (e.g., growth data).
NMikolajewicz/ATP-and-ADP-diffusion-and-degradation-model
Mathematical model that describes ATP and ADP release through a cellular membrane injury and subsequent radial diffusion and degradation in the extracellular space.
NMikolajewicz/bootstrap-4-github-pages
A Bootstrap 4 template project for Github Pages and Jekyll
NMikolajewicz/Calcium-Signal-Analyzer
Calcium signal processing algorithm for automated analysis of intracellular calcium responses
NMikolajewicz/Celegans.L2.Cello
This is preprocessed and reanalyzed C. elegans L2 data from from Cao, et al. (2017) for input into VisCello.
NMikolajewicz/Cluster-rodent-activity
This MATLAB script takes activity data obtained from metabolic cages and clusters (k-mean algorithm) the data according to inherent differences in activity levels exhibited between cages. Output provides cluster memberships and cluster diagnostics and descriptive statistics.
NMikolajewicz/easy-markdown-to-github-pages
Convert Markdown files in Github to a full website using Github Pages
NMikolajewicz/ecotyper
NMikolajewicz/Growth-curve-analysis
This MATLAB script takes animal weights and analyzes the amount and kinetics of growth.
NMikolajewicz/Qazi-2022
Analysis scripts used in Qazi et al. (2022)
NMikolajewicz/seurat
R toolkit for single cell genomics