NPSDC

PhD Student in Computer Science/ Computational Biology at UMD - College Park.

University of MarylandCollege Park

Pinned Repositories

beaveR
Language:R3 1 10
LinkedChart
Language:JavaScript10
mehenDi
R package for the differential testing on RNASeq data for TreeTerminus trees
Language:R10
Modeling
Boolean and Fuzzy Logic Modeling of Biological Systems
Language:Python10
terminus
Language:Rust10

NPSDC's Repositories

NPSDC/beaveR
Language:R3 1 10
NPSDC/mehenDi
R package for the differential testing on RNASeq data for TreeTerminus trees
Language:R10
NPSDC/terminus
Language:Rust10
NPSDC/828-O
Language:Jupyter Notebook00
NPSDC/academic-kickstart
Language:Shell2 0
NPSDC/atac-helper-scripts
Scripts for comparing the output of atac-seq
Language:Python
NPSDC/atac_seq_data
scripts for reproducing snakefile
Language:Python
NPSDC/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
NPSDC/biopy
Automatically exported from code.google.com/p/biopy
Language:Python
NPSDC/brainSimSmall
smaller RNA-Seq simulation used as an example in beaveR and trenDi
Language:R
NPSDC/cmsc423_f21_project4_sample_data
Language:SourcePawn1
NPSDC/FAB-MAB
Fairness in multiarm bandit problem
Language:Jupyter Notebook
NPSDC/fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data
Language:R0 0
NPSDC/libradicl
1
NPSDC/mehenDi-paper-analysis
Scripts for doing the analysis shown in the trenDi paper
Language:Jupyter Notebook
NPSDC/mehenDi-paper-data
Language:Python
NPSDC/NPSDC
Config files for my GitHub profile.
NPSDC/perplexity
NPSDC/piscem
Rust wrapper for the next generation (still currently in C++)
Language:Rust0 0
NPSDC/piscem-atac
Language:C2 0
NPSDC/piscem-cpp
A small sparse and fast reference index based on SShash and Tiling encoding
NPSDC/qb
QANTA Quiz Bowl AI
Language:Python1 0
NPSDC/segsinglecell
Language:R2 0
NPSDC/seine-rs
A (rust)🦀 library and suite of tools for manipulating and processing the output of salmon, alevin, and alevin-fry 🐟
NPSDC/shoal_experiments
Experiments for Shal
Language:Jupyter Notebook
NPSDC/sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
NPSDC/starter-hugo-academic
Language:Jupyter Notebook1
NPSDC/swimdown
Code for generating and evaluating the simulation for "Swimming Downstream"
Language:HTML0 0
NPSDC/treeterm-paper
Codes to reproduce the results of the paper - TreeTerminus
Language:R1 0
NPSDC/treeTerminusScripts
R code for processing the output of treeTerminus
Language:Jupyter Notebook