NYU-Molecular-Pathology

Pinned Repositories

containers
Docker and Singularity containers for Bioinformatics programs
Language:Dockerfile3 4 03
demux-nf
Nextflow pipeline for Illumina NGS demultiplexing
Language:Nextflow3 3 102
heme-reporter
Clinical reporting application for Oncomine Myeloid assay results.
Language:HTML1 3 00
IR-interpreter
Web app for clinical interpretation of Ion Reporter variant results
Language:Python4 3 112
LG-PACT
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
Language:Nextflow8 3 01
Methylation
DNA methylation for tumor subclassifications by methylation array.
Language:R3 3 11
NGS580-nf
Target exome sequencing analysis for NYU NGS580 gene panel
Language:Nextflow10 3 436
queue-stats
Output stats on the SLURM HPC cluster
Language:Python3 3 22
snsxt
bioinformatics pipeline framework for data analysis
Language:Python4 3 363
util
Utility modules for Python
Language:Python6 3 02

NYU-Molecular-Pathology/demultiplexing-stats
Demultiplexing stats report designed for NextSeq output
Language:R3 01