Pinned Repositories
IndelCallingWorkflow
A Platypus-based workflow for indel calling
SNVCallingWorkflow
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
ACEseqWorkflow
Allele-specific copy number estimation with whole genome sequencing
AlignmentAndQCWorkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs.
BioMine
Bioinformatics data-mining
Blacklist
Application for making ENCODE Blacklists
learning_ml_statistics
Learning ML with different data sets
smvplot
smvplot is a cmd line python tool to generate IGV-like screenshots.
TiNDA
Tumor in normal detection
NagaComBio's Repositories
NagaComBio/smvplot
smvplot is a cmd line python tool to generate IGV-like screenshots.
NagaComBio/TiNDA
Tumor in normal detection
NagaComBio/learning_ml_statistics
Learning ML with different data sets
NagaComBio/ACEseqWorkflow
Allele-specific copy number estimation with whole genome sequencing
NagaComBio/AlignmentAndQCWorkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs.
NagaComBio/BioMine
Bioinformatics data-mining
NagaComBio/CharGer
Characterization of Germline variants
NagaComBio/clinvar
This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
NagaComBio/compgenomr_book
NagaComBio/COWorkflowsBasePlugin
A basic Roddy plugin for computational oncology workflows
NagaComBio/cv
My CV built using RMarkdown and the pagedown package.
NagaComBio/docker-annotsv-cwl
Docker container for running AnnotSV
NagaComBio/docker_flask
A demo flask app in docker
NagaComBio/docker_test
A docker image for the ML
NagaComBio/GermlineSmallVariantAnalysis
NagaComBio/IndelCallingWorkflow
A Platypus-based workflow for indel calling
NagaComBio/Karpathy_NN_Z2H
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API. Based on Karpathy's micrograd
NagaComBio/kmodes
Python implementations of the k-modes and k-prototypes clustering algorithms, for clustering categorical data
NagaComBio/lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
NagaComBio/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
NagaComBio/NagaComBio
NagaComBio/NagaComBio.github.io
NagaComBio/octopus
Bayesian haplotype-based mutation calling
NagaComBio/PlatypusGermlinePipeline
Platypus based small variant calling on a single or multiple samples setting.
NagaComBio/python-mini-projects
A collection of simple python mini projects to enhance your python skills
NagaComBio/Python_teaching
NagaComBio/RNAseqWorkflow
Roddy RNA-seq Workflow Plugin
NagaComBio/singularity_gcnvplotting
NagaComBio/singularity_gSmVs
Singularity image with CharGer and R libraries for germline small variants workflow.
NagaComBio/superintronic
A tidy interface for coverage analysis