project
|- README.md # the top level description of content (this doc)
|
|- elsevier/ # for Elsevier journals
| |- manuscript.Rmd # executable Rmarkdown for this study
| |- manuscript.tex # TeX version of *.Rmd file (for journal submission)
| |- manuscript.pdf # PDF version of *.Rmd file
| |- appendix.Rmd # child document
| |- my_header.tex # LaTeX header file to format pdf version of manuscript
| |- bibliography.bib # BibTeX formatted references
| |- XXXX.csl # csl file to format references for journal XXX
| |- *.Rmd # child documents
| +- other files # used to export .Rmd file to .pdf file
|
|- springer/ # template for Springer journals, from `rticles` package
|
|- data # raw and primary data, are not changed once created
| |- raw/ # raw data, will not be altered
| +- process/ # cleaned data, will not be altered once created
|
|- code/ # any programmatic code
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|- results # all output from workflows and analyses
| |- tables/ # text version of tables to be rendered with kable in R
| |- figures/ # graphs, likely designated for manuscript figures
| +- pictures/ # diagrams, images, and other non-graph graphics
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|- exploratory/ # exploratory data analysis for study
| |- notebook/ # preliminary data analyses
| |- text/ # all information related to journal, meeting, outline, etc.
| +- scratch/ # temporary files that can be safely deleted or lost
|
+- Makefile # executable Makefile for this study