Pinned Repositories
FauxFlow
FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm
GENIO
Supplementary code for Siemers et al. PLOS One. 10.1371/journal.pone.0179726
NoshaR
Rocker/rstudio build instructions for docker image. Currently running a controlled last version of R v3
NoshaR-py-tracer
NoshaR (nosharstudio based on Rocker:rstudio) plus a manual python 3.7 build in /usr/local and python bioinformatics tools
sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
ShinyDocker
shinyThanos
Flexible filtering in R/Shiny - example app.
tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
NathanSiemers's Repositories
NathanSiemers/FauxFlow
FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm
NathanSiemers/GENIO
Supplementary code for Siemers et al. PLOS One. 10.1371/journal.pone.0179726
NathanSiemers/NoshaR
Rocker/rstudio build instructions for docker image. Currently running a controlled last version of R v3
NathanSiemers/NoshaR-py-tracer
NoshaR (nosharstudio based on Rocker:rstudio) plus a manual python 3.7 build in /usr/local and python bioinformatics tools
NathanSiemers/sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
NathanSiemers/ShinyDocker
NathanSiemers/shinyThanos
Flexible filtering in R/Shiny - example app.
NathanSiemers/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data