NathanSkene
UK DRI Group Leader & UKRI Future Leaders Fellow at Imperial College Dementia Research Institute
London, UK
Pinned Repositories
DataDive_scRNAseq_mapping
Imperial Medical Data Dive 2019: code for preparing multiple brain single cell RNA-seq for mapping against each other
DendriticEnrichmentPackage
Quality metric for single cell/nuclei datasets. Tests for differences in specificity of neuronal transcripts. Better datasets have more specific neuronal expression.
EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
MicroglialDepletion
MungeSumstats
Generic function for converting GWAS summary statistics to standardised LDSC/MAGMA input format
NathanSkeneNetlift.github.io
One2One
This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml
NathanSkene's Repositories
NathanSkene/EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
NathanSkene/One2One
This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml
NathanSkene/DataDive_scRNAseq_mapping
Imperial Medical Data Dive 2019: code for preparing multiple brain single cell RNA-seq for mapping against each other
NathanSkene/MungeSumstats
Generic function for converting GWAS summary statistics to standardised LDSC/MAGMA input format
NathanSkene/DendriticEnrichmentPackage
Quality metric for single cell/nuclei datasets. Tests for differences in specificity of neuronal transcripts. Better datasets have more specific neuronal expression.
NathanSkene/MicroglialDepletion
NathanSkene/NathanSkeneNetlift.github.io
NathanSkene/ALS_Human_EWCE
NathanSkene/ALS_Mouse_EWCE
NathanSkene/Amazon-Fresh-Whole-Foods-delivery-slot-finder
A tool that finds available delivery slots for Amazon's Whole Foods delivery and Amazon Fresh services
NathanSkene/Cite_all_my_papers
NathanSkene/CTD.human.midbrain.embryonic
Package of single cell RNA-seq data from human midbrain embryonic
NathanSkene/datadrivencv
R package for building customizable CVs from spreadsheets
NathanSkene/dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
NathanSkene/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
NathanSkene/InSituRNAseq_ProbeSelection
NathanSkene/liger
R package for integrating and analyzing multiple single-cell datasets
NathanSkene/my-first-binder
NathanSkene/NathanSkene.github.io
Git Pages Website for Nathan Skene
NathanSkene/PD.EWCE
NathanSkene/ProMMT
NathanSkene/Rgtsvm
The R package for SVM with GPU architecture based on the GTSVM software
NathanSkene/sdbdbf
NathanSkene/SNPLOCDATA
NathanSkene/SynaptomeMapping-Ageing
Bayesian analysis of synaptome mapping data, sharing information across regions
NathanSkene/SynaptomeMapping-Knockouts
Bayesian analysis of synaptome mapping data, sharing information across regions
NathanSkene/TFEA.ChIP
TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.
NathanSkene/thundersvm
ThunderSVM: A Fast SVM Library on GPUs and CPUs
NathanSkene/Uniprot2mgi
Map Uniprot IDs to MGI symbols
NathanSkene/wowchemy-hugo-modules
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