Code containing R, perl, python bash and awk applications for simple tasks in bioinformatics All the code is commented and described in Spanish
| Codigo | Descripcion | Lng |
|---|---|---|
blasting_and_plottingGBK.py |
Program to format a number of genes from GeneBank that are before and after in the context of the locus, or by using an optional pblast | python, awk, bash |
enzyme_restriction.py |
Program that detects restriction sites in imported sequence, returns the number of fragments and their length. | python |
awk_on_gene_expression_data |
Several exercises on awk operating on gene expression data | awk |
proteome_blastp.py |
Performs blastp analysis, muscle alignment and trees over proteins of subject proteomes downloaded using a urls_file with a query protein | python, awk, bash |
string_mappings.sh |
Gets mappings of STRINGdb to UNIPROT identifiers for proteins of a single species | bash |
uniprot_mappings.sh |
Gets all annotated mappings of UNIPROT identifiers for the proteome of a species | bash |
retrievalRNA.sh |
Retrieves ncRNA from an old annotation file | bash |