Pinned Repositories
cobar-miniproject-2023
Miniproject for BIOENG-456 Controlling behavior in animals and robots
DeepFly3D
Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.
DeepFly3DAnnotation
df3dPostProcessing
Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles
flygym
Simulating embodied sensorimotor control with NeuroMechFly v2
Imaging-Drosophila-VNC-and-CC
Code used for the paper "Imaging neural activity in the ventral nerve cord and cervical connective of behaving adult Drosophila" by Chen, Hermans, et al. 2018
LiftPose3D
NeuroMechFly
A neuromechanical model of adult Drosophila melanogaster.
sequential-inverse-kinematics
Sequential inverse kinematics pipeline.
utils_video
Video utility functions for 2p imaging data and behaviour.
Neuroengineering Laboratory @ EPFL - Ramdya Lab's Repositories
NeLy-EPFL/DeepFly3D
Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.
NeLy-EPFL/NeuroMechFly
A neuromechanical model of adult Drosophila melanogaster.
NeLy-EPFL/flygym
Simulating embodied sensorimotor control with NeuroMechFly v2
NeLy-EPFL/df3dPostProcessing
Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles
NeLy-EPFL/sequential-inverse-kinematics
Sequential inverse kinematics pipeline.
NeLy-EPFL/utils_video
Video utility functions for 2p imaging data and behaviour.
NeLy-EPFL/nmf2-paper
Code for generating some figures in for the NeuroMechFly v2 paper.
NeLy-EPFL/ofco
Optical flow motion correction
NeLy-EPFL/SeptaCam
Code for controlling the seven-camera system
NeLy-EPFL/twoppp
Preprocessing pipeline for 2p imaging and behaviour data.
NeLy-EPFL/utils2p
Utility functions for data generated with ThorImage and ThorSync.
NeLy-EPFL/.github
NeLy-EPFL/cobar-exercises
NeLy-EPFL/DeMotion5D
Remove sample movement from 5D microscopy data (xyz+time+color)
NeLy-EPFL/dn_networks
Repository holding the code for Braun et al. 2023
NeLy-EPFL/_media
This repository is for larger media files (eg. GIFs/videos on the README).
NeLy-EPFL/antennal-grooming
Repository hosting the analysis code for Ozdil et al 2024.
NeLy-EPFL/Drosophila2DPose
NeLy-EPFL/flygym-scratch
ARCHIVED | An internal fork of FlyGym. Used for student projects and code that are too exploratory to be a branch on the main FlyGym repo.
NeLy-EPFL/flyvis
A connectome constrained deep mechanistic network (DMN) model of the fruit fly visual system
NeLy-EPFL/multimaze_recorder
Tools to operate Matthias' high-throughput recording setup
NeLy-EPFL/multisensory_objects
This repository contains code to analyse experiments involving agar and food based objects.
NeLy-EPFL/neuromechfly-workshop
NeuroMechFly workshop.
NeLy-EPFL/nmf2-videos
NMF2 videos linked from preprint. DO NOT DELETE OR REMOVE THIS REPOSITORY.
NeLy-EPFL/object_preference
This repository contains tools for analysising food object preferece in the scope of Alice Canuti and Samara Santarelli's project
NeLy-EPFL/PyBundleAdjustment
NeLy-EPFL/sleap_tools
A repository to regroup useful code to manipulate sleap objects and h5 exports, as well as help and method to setup tracking routines.
NeLy-EPFL/Tracking_Analysis
This repository comprises a set of tools used to perform tracking on behaviour arena data, analysis and plotting.
NeLy-EPFL/utils_behavior
Utility functions to manipulate and analyze behavior videos and associated data (tracking...) acquired in various setups and settings.
NeLy-EPFL/vnc_networks
Code to analyse the MANC connectome and perform connectome-constrained modelling