Neato-Nick
Evolutionary and population genomics. Postdoc at Brown. Life is a workaround
@grunwaldlab Providence, RI
Pinned Repositories
alan
Alignment viewer for linux terminal
Conference_Posters
Digital resources for posters presented at conferences
Elections_2018
Some analysis of the 2018 elections. Focus is on Oregon.
fastq2highQualVCF
Scripts to process reads from FASTQ to VCF including filters
iSecrete
Process outputs from various secretome prediction tools
mllR
R package to wrap many common population genetics analyses into pipelines, beginning from raw VCF file
NSF-GRFP
My complete application for the NSF GRFP
RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
TidyTuesday_BPP
BPP and BPP alums meet for Tidy Tuesday
variant-calling
Call variants de novo or using a reference
Neato-Nick's Repositories
Neato-Nick/NSF-GRFP
My complete application for the NSF GRFP
Neato-Nick/mllR
R package to wrap many common population genetics analyses into pipelines, beginning from raw VCF file
Neato-Nick/TidyTuesday_BPP
BPP and BPP alums meet for Tidy Tuesday
Neato-Nick/fastq2highQualVCF
Scripts to process reads from FASTQ to VCF including filters
Neato-Nick/Conference_Posters
Digital resources for posters presented at conferences
Neato-Nick/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
Neato-Nick/variant-calling
Call variants de novo or using a reference
Neato-Nick/alan
Alignment viewer for linux terminal
Neato-Nick/fasta2nuccomp
Summarize the contents of FASTA files.
Neato-Nick/fastq-processing
Scripts that are useful in either a de novo or reference-based variant calling workflow
Neato-Nick/iSecrete
Process outputs from various secretome prediction tools
Neato-Nick/poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Neato-Nick/Elections_2018
Some analysis of the 2018 elections. Focus is on Oregon.
Neato-Nick/countToFPKM
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
Neato-Nick/effectR
An R package to call oomycete effectors
Neato-Nick/gatk
Official code repository for GATK versions 4 and up
Neato-Nick/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
Neato-Nick/glossary
An R packge to add and link to a glossary in Rmarkdown-based websites
Neato-Nick/Learning-Python
Neato-Nick/mypackage
Neato-Nick/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Neato-Nick/osu-salaries
parse salary .pdf into pandas df to analyze salary by department type
Neato-Nick/pico_galaxy
Galaxy tools and wrappers for sequence analysis
Neato-Nick/RNASeq_Pipelines
Scripts for RNAseq analysis using SGE clusters, bash and R.
Neato-Nick/Using_R_With_Databases
Standardized Environment for R-studio Server.
Neato-Nick/vcfR
Tools to work with variant call format files
Neato-Nick/vcfR_documentation
Documentation for vcfR