The Neotoma Paleoecology Database Collective
Data and code supporting collaboration and outreach around the Neotoma Paleoecology Database
Global
Pinned Repositories
api_nodetest
node.js and express implementation for the Neotoma API
bulk-baconizing
Using bacon to generate a large number of new chronologies from existing Neotoma records.
Current_Workshop
Current Workshops for Neotoma
Explorer
Neotoma Explorer - issue tracker and code repository
MetaExtractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
neotoma2
Repository for the updated neotoma R package.
RangeMapper
Code for making animations of Neotoma taxa using Carto VL
StratigraphicDiagrammer
Repo, code base, and issue tracker for Neotoma Explorer's Stratigraphic Diagrammer
Workbooks
A repository for paleoecology-specific workflows.
Workshops
This repository is a location for storing and developing workshops materials.
The Neotoma Paleoecology Database Collective's Repositories
NeotomaDB/MetaExtractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
NeotomaDB/neotoma2
Repository for the updated neotoma R package.
NeotomaDB/Current_Workshop
Current Workshops for Neotoma
NeotomaDB/api_nodetest
node.js and express implementation for the Neotoma API
NeotomaDB/Explorer
Neotoma Explorer - issue tracker and code repository
NeotomaDB/Workshops
This repository is a location for storing and developing workshops materials.
NeotomaDB/neotoma_doi
Managing DOIs with a postgres database and the DataCite API.
NeotomaDB/neotoma_lakes
A repository for managing the matching of lake data between national hydrographic databases and Neotoma records.
NeotomaDB/Neotoma_SQL
Repository for functions associated with Neotoma's Postgres DB
NeotomaDB/neotomadb.github.io
Neotoma website on github.
NeotomaDB/xlsx2Tilia
Tilia file creation (XML) from an MS Excel database and template in Python
NeotomaDB/landingpagev3
A repository for the updated (Vue3) Neotoma Landing Pages
NeotomaDB/api_dockers
A repository for docker containers that can be used to run a local version of the Neotoma infrastructure.
NeotomaDB/article-relevance
Repository based on the UBC MDS Meta Extractor Project that just uses the article relevance component.
NeotomaDB/article_project
A project for the Docker Containers associated with the article-recommender.
NeotomaDB/clean_backup
NeotomaDB/DataBUS
The Neotoma Paleoecology Database Data Bulk Uploader System
NeotomaDB/DataBUS_210Pb
The Neotoma Paleoecology Database Data Bulk Uploader System
NeotomaDB/DataBUS_Isotopes
The Neotoma Paleoecology Database Data Bulk Uploader System
NeotomaDB/DataBUS_Lead210
Lead210 DataBUS push.
NeotomaDB/DataBUS_Ostracode
Ostracode Bulk Uploader System
NeotomaDB/DataBUS_SISAL
NeotomaDB/DwC-Mapping
A document explaining how we will map Neotoma against the DarwinCore Schema
NeotomaDB/Interoperability_DeepDive
A repository for managing the FAIROS Quaternary Interoperability project.
NeotomaDB/neotoma_article_api
A repository for the article relevance tool API
NeotomaDB/neotoma_bookdown
An online manual for the Neotoma Database, authored using Bookdown.
NeotomaDB/NeotomaSummary
A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.
NeotomaDB/neotomataxonomy
A viewer for Neotoma Taxonomic data.
NeotomaDB/taxoninsertion
A package to bulk upload taxonomic data (beetles in this case) from Family/genus/species info.
NeotomaDB/tilia_api
A repository for the implementation of the Tilia/uploader API