NeuroML/pyNeuroML

Issues

• Speed up unit tests

  #388 opened 24 days ago by sanjayankur31
  1

• Error: pyneuroml/povray/OverlaySimulation.py:279:31: F821 Undefined name `volts`

  #389 opened 24 days ago by sanjayankur31
  0

• Enable coverage info on the repo

  #385 opened 25 days ago by sanjayankur31
  1

• Tests on master failing

  #376 opened a month ago by pgleeson
  0

• Add a SWC loader

  #375 opened a month ago by sanjayankur31
  3

• Make getting model file list SBML aware

  #372 opened a month ago by sanjayankur31
  0

• Implement exporting to Neuroglancer formats

  #369 opened a month ago by sanjayankur31
  1

• Implement vispy based viewing of SWC files

  #362 opened 2 months ago by sanjayankur31
  2

• Add utility function to translate cell to that soma is at origin

  #360 opened 2 months ago by sanjayankur31
  0

• vispy-viewer: make it run in jupyter notebooks using jupyter_rfb

  #359 opened 2 months ago by sanjayankur31
  0

• [Bug] pynml-plotmorph: vispy: no mouse events

  #358 opened 2 months ago by Sietse20
  3

• Add analysis of KineticState channels to `pynml-channelanalysis`

  #357 opened 2 months ago by sanjayankur31
  0

• [Bug] Cannot create spike output file for class cell2CaPools

  #198 opened 2 months ago by harshagurnani
  8

• Include generation of animated matplotlib plots

  #279 opened 7 months ago by sanjayankur31
  13

• Update LEMSSimulation to also take string parameters

  #199 opened 2 years ago by sanjayankur31
  0

• Extend `pynml` to include a `-biosimulations` flag to submit simulations

  #347 opened 2 months ago by sanjayankur31
  0

• [Bug] ExportSWC: exceptions are wrong

  #330 opened 3 months ago by sanjayankur31
  2

• Implement functions to send generated OMEX file to Biomodels using API

  #337 opened 2 months ago by sanjayankur31
  0

• Implement metadata generation for OMEX file generation

  #336 opened 2 months ago by sanjayankur31
  0

• Ascertain and set `NEURON_HOME` if the environment variable is not set

  #308 opened 4 months ago by sanjayankur31
  5

• Add option to generate SEDML file from LEMS and use this as master in exported OMEX archive

  #329 opened 3 months ago by pgleeson
  0

• archiving/nsg: include HDF5 exports

  #285 opened 7 months ago by sanjayankur31
  2

• Add option to validate SED-ML files

  #277 opened 3 months ago by pgleeson
  2

• Add tests running simple neuron + netpyne sims on nsg

  #268 opened 8 months ago by sanjayankur31
  1

• Add utility function to create SpikeArray from file

  #328 opened 3 months ago by sanjayankur31
  0

• [vispy viewer] investigate if we can record a video of the rotating image

  #318 opened 4 months ago by sanjayankur31
  2

• pynml-modchananalysis: allow saving of plots without user intervention (for batch processing)

  #201 opened 2 years ago by sanjayankur31
  2

• Add function to generate LFP plots

  #241 opened a year ago by sanjayankur31
  2

• [vispy viewer] align cells along its first principal component

  #317 opened 4 months ago by sanjayankur31
  3

• [simulation] Add method to run multiple sims in parallel using pp

  #321 opened 3 months ago by sanjayankur31
  0

• Add warnings about missing files of model during visualisation

  #315 opened 4 months ago by lej0hn
  1

• [cell analysis] Implement morphological statistics for NeuroML cell models

  #319 opened 4 months ago by sanjayankur31
  0

• Add option to save vispy generated meshdata

  #278 opened 7 months ago by sanjayankur31
  5

• Refactor: de-duplicate PlotSpikes code

  #303 opened 5 months ago by sanjayankur31
  2

• Chore: run `no_implicit_optional` on code base

  #299 opened 5 months ago by sanjayankur31
  0

• reloading data uses quantity path string instead of column id

  #225 opened 5 months ago by sanjayankur31
  0

• Issue compiling .mod files on Apple Silicon [Bug]

  #293 opened 5 months ago by olitr20
  5

• Add option to validate SBML

  #250 opened 7 months ago by pgleeson
  3

• As a user, I would like to add headers to the output files I generate so I can easily see what was recorded in each item at a later date

  #214 opened 8 months ago by sanjayankur31
  3

• Add functionality to generate ion channel distribution metrics in models

  #236 opened 9 months ago by sanjayankur31
  0

• Print `python -version`, neuron path etc. info in `pyneuroml -version`

  #224 opened 9 months ago by sanjayankur31
  0

• [Bug] pynml-modchananalysis: `ZeroDivisionError: float division by zero`

  #202 opened 9 months ago by sanjayankur31
  5

• Implement archiving to combine archive format

  #207 opened 9 months ago by sanjayankur31
  2

• Suggested updates to 2D plots etc

  #220 opened 9 months ago by pgleeson
  1

• Plotting inactivation/activation

  #197 opened a year ago by christian-oreilly
  4

• mview_neuroml2.hoc docs not create default soma, dendrite, axonal groups

  #204 opened a year ago by sanjayankur31
  2

• As a user, I want to be able to run my simulations using different backends without modifying my Python NeuroML simulation code

  #210 opened a year ago by sanjayankur31
  0

• [Bug] Output export to Neuron are specific on ions, not channels

  #196 opened 2 years ago by christian-oreilly
  9

• Plotting: add wire diagram generator for morphologies

  #192 opened 2 years ago by sanjayankur31
  0

• CellBuilder: add function to add unbranched list of segments to a cell

  #190 opened 2 years ago by sanjayankur31
  1