chromosome arm positions hg19

[ccruizm]

Good day!

I am really excited to use this interesting tool for my scRNA data. I would like to know where I could find or how I can make the file that contains the chromosome arm position for the genome version Hg19.

Thanks in advance!

[WRui]

Good day!

I am really excited to use this interesting tool for my scRNA data. I would like to know where I could find or how I can make the file that contains the chromosome arm position for the genome version Hg19.

Thanks in advance!
you can download cytoBand or get from CaSpER package.
Chrom Start End Length
1p 1 0 1.25e+08 125000000
1q 1 1.25e+08 249250621 124250621
2p 2 0 93300000 93300000
2q 2 93300000 243199373 149899373
3p 3 0 9.1e+07 91000000
3q 3 9.1e+07 198022430 107022430
4p 4 0 50400000 50400000
4q 4 50400000 191154276 140754276
5p 5 0 48400000 48400000
5q 5 48400000 180915260 132515260
6p 6 0 6.1e+07 61000000
6q 6 6.1e+07 171115067 110115067
7p 7 0 59900000 59900000
7q 7 59900000 159138663 99238663
8p 8 0 45600000 45600000
8q 8 45600000 146364022 100764022
9p 9 0 4.9e+07 49000000
9q 9 4.9e+07 141213431 92213431
10p 10 0 40200000 40200000
10q 10 40200000 135534747 95334747
11p 11 0 53700000 53700000
11q 11 53700000 135006516 81306516
12p 12 0 35800000 35800000
12q 12 35800000 133851895 98051895
13p 13 0 17900000 17900000
13q 13 17900000 115169878 97269878
14p 14 0 17600000 17600000
14q 14 17600000 107349540 89749540
15p 15 0 1.9e+07 19000000
15q 15 1.9e+07 102531392 83531392
16p 16 0 36600000 36600000
16q 16 36600000 90354753 53754753
17p 17 0 2.4e+07 24000000
17q 17 2.4e+07 81195210 57195210
18p 18 0 17200000 17200000
18q 18 17200000 78077248 60877248
19p 19 0 26500000 26500000
19q 19 26500000 59128983 32628983
20p 20 0 27500000 27500000
20q 20 27500000 63025520 35525520
21p 21 0 13200000 13200000
21q 21 13200000 48129895 34929895
22p 22 0 14700000 14700000
22q 22 14700000 51304566 36604566
Xp X 0 60600000 60600000
Xq X 60600000 155270560 94670560
Yp Y 0 12500000 12500000
Yq Y 12500000 59373566 46873566