Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
BLAST-clone
Capstone_R_code
Comparative-Annotation-Toolkit
tools only
FixOverlapVCF
A tool to fix the funky format tags produced by bcftools
freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
genomics_scripts
scripts produced to work with the notch2nl regions
gordian_info
hal
Hierarchical Alignment Format
htslib
C library for high-throughput sequencing data formats
Nheyer's Repositories
Nheyer/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Nheyer/BLAST-clone
Nheyer/Capstone_R_code
Nheyer/Comparative-Annotation-Toolkit
tools only
Nheyer/FixOverlapVCF
A tool to fix the funky format tags produced by bcftools
Nheyer/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Nheyer/genomics_scripts
scripts produced to work with the notch2nl regions
Nheyer/gordian_info
Nheyer/hal
Hierarchical Alignment Format
Nheyer/htslib
C library for high-throughput sequencing data formats
Nheyer/jumpcutter
Automatically edits vidx. Explanation here: https://www.youtube.com/watch?v=DQ8orIurGxw
Nheyer/linkage_calc
A C++ program that utilizes gametic linkage disequilibrium, permutation tests, and bootstrapping to calculate linkage from a multi-sample gvcf
Nheyer/odgi
optimized dynamic genome graph implementation
Nheyer/phast
PHAST
Nheyer/sequenceTubeMap
displays multiple genomic sequences in the form of a tube map
Nheyer/SUMSTATS
Format of data for GWAS summary statistics