Pinned Repositories
ViralWasm
A client-side user-friendly web application suite for viral genomics.
ViralWasm-Consensus
A client-side WebAssembly pipeline for viral consensus sequence calling
ViralWasm-Epi
A client-side WebAssembly pipeline for viral molecular epidemiology
TreeN93
Reference-Genomes
Preprocessed reference genomes for use with ViralMSA, ViralWasm, etc.
Viral-Phylogenetics-Activity
Activity about viral phylogenetics, targeting K-12 students
AmpliPy
Python implementation of viral trimming + variant calling, similar to iVar
SEPIA
ViralWasm-Paper
Files and scripts related to the ViralWasm paper
Virus-Database-Notes
Notes about a potential virus database
Niema Lab's Repositories
Niema-Lab/ViralWasm-Epi
A client-side WebAssembly pipeline for viral molecular epidemiology
Niema-Lab/ViralWasm
A client-side user-friendly web application suite for viral genomics.
Niema-Lab/ViralWasm-Consensus
A client-side WebAssembly pipeline for viral consensus sequence calling
Niema-Lab/Viral-Phylogenetics-Activity
Activity about viral phylogenetics, targeting K-12 students
Niema-Lab/Reference-Genomes
Preprocessed reference genomes for use with ViralMSA, ViralWasm, etc.
Niema-Lab/Virus-Database-Notes
Notes about a potential virus database
Niema-Lab/ViralWasm-Paper
Files and scripts related to the ViralWasm paper
Niema-Lab/ViralWasm-Files
Various files related to ViralWasm
Niema-Lab/ENLACE-2023
Files related to the research project conducted during UCSD ENLACE 2023
Niema-Lab/.github
Niema-Lab/AmpliPy
Python implementation of viral trimming + variant calling, similar to iVar
Niema-Lab/TreeN93
Niema-Lab/SEPIA
Niema-Lab/SEPIA-paper-final
SEPIA (Simulation-based Evaluation Of PriorIzation Algorithms)