/Introduction-To-Bioinformatics

Primary LanguageJupyter NotebookMIT LicenseMIT

Introduction-To-Bioinformatics

  • Nikan Vasei - 400105303
  • Erfan Mohammadi - 400170352
  • Sero Hartounian - 400170354

Setup and requirements

Find the imposter

  • All of the required libraries are included in the notebook

Comparative Analysis of Mitochondrial Genomes

  • All of the required libraries are included in the notebook
  • MAFFT - required for the MSA(Multi-Sequence Alignment) task
  • MEGA - required for constructing the phylogenetic tree using the NJ(Neighbor-Joining) Algorithm
  • RAxML-NG (Binary file included in the Applications directory) - required for constructing the phylogenetic tree using the ML(Maximum-Likelihood) Algorithm
  • MrBayes - required for constructing the phylogenetic tree using the BI(Bayesian Inference) Algorithm
  • FigTree (Jar file included in the Applications directory) - required for visualizing the phylogenetic trees
    • You need Java (version 6 or later) in order to run the jar file for MrBayes

Neural and Immunological Responses of Zebra Finches

  • All of the required libraries are included in the notebook