Nilad

Nilad's Stars

• schneebergerlab/plotsr

  Tool to plot synteny and structural rearrangements between genomes

  Language:Python28728

• schneebergerlab/syri

  Synteny and Rearrangement Identifier

  Language:Cython34537

• mahiriart/Auract

  Tool for vizualizing phlygenomic data

  Language:Python1

• BU-ISCIII/plasmidID

  PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

  Language:Shell388

• labgem/PPanGGOLiN

  Build a partitioned pangenome graph from microbial genomes

  Language:Python24230

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C789168

• rrwick/Long-read-assembler-comparison

  Benchmarking of long-read assembly tools for bacterial whole genomes

  Language:Python17014

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++29328

• rrwick/Bacsort

  a collection of scripts for organising bacterial genomes by species

  Language:Python769

• rrwick/Porechop

  adapter trimmer for Oxford Nanopore reads

  Language:C++340128

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++567131

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++58898

• rrwick/Assembly-Dereplicator

  A tool for removing redundant genomes from a set of assemblies

  Language:Python6810

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k333

• GenomiqueENS/eoulsan-tools

  Additional formats and Galaxy tool files for Eoulsan

  22

• GenomiqueENS/eoulsan

  A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

  Language:Java5210

• GenomiqueENS/aozan

  An automated post sequencing data processing pipeline for Illumina HiSeq

  Language:HTML124

• GenomiqueENS/dockerfiles

  Language:Dockerfile8223

• GenomiqueENS/toullig

  Language:Java1