Repository containing the code for the Visium spatial transcriptomic analysis of mouse gut under steady state and H. Polygyrus infection.
BioRxiv paper: Spatial transcriptomics reveals focal induction of molecular responses and cellular interactions in the small intestine during Heligmosomoides polygyrus infection. (https://www.biorxiv.org/content/10.1101/2024.02.09.579622v1)