Pinned Repositories
2023-prot-impute-benchmark
The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study
ALSO
casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
casanovo_asms2023
ASMS 2023 De Novo Peptide Sequencing with Casanovo Workshop Materials
crema
Confidence Estimation for Mass Spectrometry Proteomics
depthcharge
A deep learning toolkit for mass spectrometry
MSFactor
Impute mass spectrometry data using non-negative matrix factorization
Pepper
Peptide coefficient predictor
Polarbear
Polarbear translates between different single-cell data modalities
Sceptic
Pseudotime analysis for time-series single-cell sequencing and imaging data
Noble Lab Department of Genome Sciences UW's Repositories
Noble-Lab/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
Noble-Lab/crema
Confidence Estimation for Mass Spectrometry Proteomics
Noble-Lab/Pepper
Peptide coefficient predictor
Noble-Lab/2023-prot-impute-benchmark
The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study
Noble-Lab/Polarbear
Polarbear translates between different single-cell data modalities
Noble-Lab/cascadia
Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
Noble-Lab/depthcharge
A deep learning toolkit for mass spectrometry
Noble-Lab/Sceptic
Pseudotime analysis for time-series single-cell sequencing and imaging data
Noble-Lab/CellCycleNet
Predicting cell cycle stage from 3D single-cell nuclear-stained images
Noble-Lab/FDRBench
Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment
Noble-Lab/edison
Compute scaffolding accuracy by its edit distance to a reference genome
Noble-Lab/trans-C
Identifying sets of loci that interact strongly in trans
Noble-Lab/casanovo_asms2023
ASMS 2023 De Novo Peptide Sequencing with Casanovo Workshop Materials
Noble-Lab/hic_scaffolder_benchmarks
A benchmarking study exploring the accuracy of popular Hi-C scaffolders.
Noble-Lab/Icebear
Noble-Lab/MSFactor
Impute mass spectrometry data using non-negative matrix factorization
Noble-Lab/python-style-demo
A small repository that contains some advice for styling and using Python code.
Noble-Lab/2022_min_HAB
Noble-Lab/ALSO
Noble-Lab/hicrep
A fast implementation of the HiCRep algorithm for computing similarities between pairs of Hi-C matrices.
Noble-Lab/lda_matrix_prior
Noble-Lab/mokapot-analyses
The code for reproducing the results from "mokapot: Fast and flexible semi-supervised learning for peptide detection"
Noble-Lab/subset-neighbor-search
Subset-neighbor-search is a method for FDR control from tandem mass spectrometry data, applicable when only a subset of peptides or proteins are of interest
Noble-Lab/synmatch
Synmatch - Linking cells across single-cell modalities by synergistic matching of neighborhood structure
Noble-Lab/2020_cp34h
Code for "Supercooled, subzero, high salinity incubations of Cp34H reveal long-term mitigation strategies and detectable (peptide) biomarkers for life on other icy worlds"
Noble-Lab/ACCOST
Noble-Lab/multi-species-benchmark
Noble-Lab/nih-latex
Template for producing NIH grant proposals using latex
Noble-Lab/ppx-workflow
Noble-Lab/Sunbear
single cell multimodal/multicondition temporal model