NozomiAdams

NozomiAdams's Stars

• lponisio/hedgerow_assembly

  Language:C++13

• stajichlab/GenomeAnnotation

  Description of Genome Annotation Procedures

  Language:JavaScript3

• hyphaltip/GEN220_2015

  GEN220 course, Fall 2015 edition

  Language:JavaScript2

• lponisio/network_assembly

  simulation for manuscript "Coevolution leaves a weak signal on ecological networks" (DOI: 10.1002/ecs2.1798) to generate ecological networks

  Language:R21

• lponisio/PonisioLab

  Guiding principles of the Ponisio lab

  Language:TeX66

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++38564

• FePhyFoFum/phyx

  phylogenetics tools for linux (and other mostly posix compliant) computers

  Language:C++11117

• kaist-comet/LaTeX-Paper-Guide

  A LaTeX template / tutorial

  Language:TeX18232

• Idnan/bash-guide

  A guide to learn bash

  11.8k1k

• hyphaltip/MicrobeDB

  Provides a local database of all completed genomes for Bacteria and Archaea from NCBI

  Language:Perl2

• stajichlab/Microbiome_resources

  Microbiome tools and resources for Stajichlab projects

  Language:Python2

• naupaka/URen-et-al-Xylariaceae-scripts

  Scripts and data for a manuscript entitled "Contribution of North American endophytic and endolichenic fungi to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)"

  Language:R11

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R468142

• merenlab/anvio

  An analysis and visualization platform for 'omics data

  Language:Python433144

• dereneaton/ipyrad

  Interactive assembly and analysis of RAD-seq data sets

  Language:Jupyter Notebook7240

• husonlab/megan-ce

  MEGAN Community Edition

  Language:Java6622

• pandas-dev/pandas

  Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

  Language:Python43.4k17.8k

• biocore/qiime

  Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

  Language:Python285268

• agordon/libgtextutils

  Gordon's Text utils Library

  Language:C++1017

• agordon/fastx_toolkit

  FASTA/FASTQ pre-processing programs

  Language:C16460

• torognes/swarm

  A robust and fast clustering method for amplicon-based studies

  Language:C++12323

• numpy/numpy

  The fundamental package for scientific computing with Python.

  Language:Python27.7k9.9k

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python515129

• atom/atom

  :atom: The hackable text editor

  Language:JavaScript60.2k17.4k

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.3k1.7k

• bioperl/bioperl.github.io

  The BioPerl Web site: http://bioperl.org

  Language:CSS139

• bioperl/bioperl-live

  Core BioPerl 1.x code

  Language:Perl296182

• revbayes/RevGadgets_old

  Postprocessing gadgets for output generated by RevBayes

  Language:R84

• revbayes/revbayes_tutorial

  Compilation of tutorials for RevBayes

  Language:TeX2219

• revbayes/old-site

  Language:HTML21