Align with allotrope
Opened this issue · 1 comments
cmungall commented
Allotrope includes a mid-upper level ontology for the biological domain with similar aims to COB, see https://www.allotrope.org/ontologies
cmungall commented
some example mappings:
| subject_id | subject_label | predicate_id | object_id | object_label |
|---|---|---|---|---|
| SEPIO:0000048 | agent role | skos:closeMatch | allotrope.role:AFRL_0000095 | agent role |
| RO:0002351 | has member | skos:closeMatch | skos:member | has member |
| RO:0002180 | has component | skos:closeMatch | allotrope.property:AFX_0000972 | has component |
| PATO:0002242 | velocity | skos:closeMatch | allotrope:result#AFR_0002632 | velocity |
| PATO:0000125 | mass | skos:closeMatch | allotrope:result#AFR_0001844 | mass |
| OBI:0200000 | data transformation | skos:closeMatch | allotrope:process#AFP_0003598 | data transformation |
| OBI:0000314 | proxy for | skos:closeMatch | allotrope.property:AFX_0002821 | proxy for |
| OBI:0000245 | organization | skos:closeMatch | allotrope:material#AFM_0001085 | organization |
| OBI:0000070 | assay | skos:closeMatch | allotrope:process#AFP_0002680 | assay |
| IAO:0000412 | imported from | skos:closeMatch | allotrope.property:AFX_0002865 | imported from |
| IAO:0000306 | table | skos:closeMatch | allotrope.equipment:AFE_0002210 | table |
| IAO:0000115 | definition | skos:closeMatch | skos:definition | definition |
| IAO:0000115 | definition | skos:closeMatch | allotrope:result#AFR_0001561 | definition |
| IAO:0000104 | plan specification | skos:closeMatch | allotrope:result#AFR_0001501 | plan specification |
| COB:0000511 | has quantity | skos:closeMatch | qudt:quantity | has quantity |
| COB:0000082 | planned process | skos:closeMatch | OBI:0000011 | completely executed planned process |
| COB:0000078 | concretizes | skos:closeMatch | RO:0000059 | concretizes |
| COB:0000077 | action specification | skos:closeMatch | allotrope:result#AFR_0000941 | action specification |
| COB:0000011 | atom | skos:closeMatch | allotrope:material#AFM_0001028 | atom |
| CL:0000000 | cell | skos:closeMatch | allotrope:material#AFM_0000341 | cell |
| CHEBI:30222 | neutron | skos:closeMatch | allotrope:material#AFM_0001027 | neutron |
| CHEBI:24636 | proton | skos:closeMatch | allotrope:material#AFM_0001023 | proton |
| CHEBI:23367 | molecular entity | skos:closeMatch | COB:0000013 | molecular entity |
| CHEBI:10545 | electron | skos:closeMatch | allotrope:material#AFM_0000418 | electron |