obofoundry
There are 253 repositories under obofoundry topic.
monarch-initiative/ontogpt
LLM-based ontological extraction tools, including SPIRES
DiseaseOntology/HumanDiseaseOntology
Repository for the Human Disease Ontology.
obophenotype/human-phenotype-ontology
Ontology for the description of human clinical features
BFO-ontology/BFO
BFO repository including source code and latest documents
ontodev/robot
ROBOT is an OBO Tool
monarch-initiative/mondo
Mondo Disease Ontology
althonos/pronto
A Python frontend to (Open Biomedical) Ontologies.
INCATools/ontology-development-kit
Bootstrap an OBO Library ontology
geneontology/go-ontology
Source ontology files for the Gene Ontology
FoodOntology/foodon
The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.
biolink/biolink-model
Schema and generated objects for biolink data model and upper ontology
callahantiff/PheKnowLator
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
OBOFoundry/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
mapping-commons/sssom
Simple Standard for Sharing Ontology Mappings
obophenotype/cell-ontology
An ontology of cell types
EnvironmentOntology/envo
A community-driven ontology for the representation of environments
obophenotype/uberon
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
INCATools/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
biolink/ontobio
python library for working with ontologies and ontology associations
EBISPOT/OLS
Ontology Lookup Service from SPOT at EBI
The-Sequence-Ontology/SO-Ontologies
Collect of SO Ontologies
OBOAcademy/obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
oborel/obo-relations
RO is an ontology of relations for use with biological ontologies
callahantiff/OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
information-artifact-ontology/IAO
information artifact ontology
OBOFoundry/purl.obolibrary.org
A system for managing OBO PURLs
obophenotype/upheno
The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
obi-ontology/obi
The Ontology for Biomedical Investigations
monarch-initiative/curategpt
LLM-driven curation assist tool
EBISPOT/DUO
Ontology for consent codes and data use requirements
geneontology/obographs
Basic and Advanced OBO Graphs: specification and reference implementation
biopragmatics/pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
Planteome/plant-ontology
Repository for the Plant Ontology
pato-ontology/pato
PATO - the Phenotype And Trait Ontology
jannahastings/emotion-ontology
Ontology for emotions and affective phenomena
monarch-initiative/MAxO
Medical action ontology