biopragmatics/pyobo

Issues

• Adding other ontolo-dbs

  #194 opened a month ago by ialarmedalien
  3

• Python 3.12 compatibility

  #190 opened 2 months ago by kkaris
  1

• Include transferred entries (but marked as obsolete)

  #187 opened 5 months ago by cmungall
  0

• Make it clear that the eccode artefact is derived from expasy and not enzyme-database org

  #186 opened 5 months ago by cmungall
  0

• Intermittent error when trying to get name by curie

  #185 opened 6 months ago by kkaris
  1

• Add descriptions to uniprot

  #117 opened 7 months ago by cthoyt
  0

• Providing explicit version for `pyobo.get_name_by_curie` still calls `bioversions.get_version`

  #183 opened 7 months ago by kkaris
  0

• Retain deleted ECs but as an obsolete record

  #178 opened 7 months ago by cmungall
  0

• Error while trying to write `ncbigene.obo` via pyobo

  #179 opened 7 months ago by hrshdhgd
  1

• Add more metadata to EC entries

  #177 opened 7 months ago by cmungall
  0

• possibilities to extend content for OBODB UniProt

  #172 opened 7 months ago by realmarcin
  5

• Add datatypes to properties

  #174 opened 8 months ago by cthoyt
  0

• Decouple annotations/associations from the main release obo/owl files

  #170 opened 9 months ago by cmungall
  0

• rhea ETL does not add labels for directional forms

  #169 opened 9 months ago by cmungall
  3

• Add participants to Rhea import

  #167 opened 9 months ago by cmungall
  3

• Annotate genes in FlyBase with SO terms

  #165 opened 10 months ago by cthoyt
  0

• Use preferred prefixes when outputting OBO Format

  #161 opened a year ago by cmungall
  0

• Grab ICD-10 to ICD-11 mapping table

  #128 opened a year ago by cthoyt
  1

• Unidecode Error

  #150 opened a year ago by Crispae
  8

• Include overlaps relationship in interpro ingest

  #162 opened a year ago by cmungall
  0

• Annotate genes in HGNC with SO terms

  #118 opened 3 years ago by cthoyt
  4

• New sources for funders

  #157 opened a year ago by cthoyt
  0

• `pyobo.get_sssom_df()` for UMLS returns `prefix:PREFIX:ID`

  #155 opened a year ago by hrshdhgd
  1

• Turn off name lookup in SSSOM export

  #153 opened a year ago by cthoyt
  0

• coordinate with SIB on conversion of swisslipids

  #140 opened 2 years ago by cmungall
  10

• Unzipping resource file fails with EOFError

  #148 opened 2 years ago by kkaris
  0

• coordinate with SIB on conversion of EC

  #146 opened 2 years ago by cmungall
  0

• Improve support for default namespace when parsing OBO

  #145 opened 2 years ago by cthoyt
  0

• Errors related to robot conversion of vo

  #144 opened 2 years ago by bgyori
  1

• Error processing EMAPA

  #142 opened 2 years ago by bgyori
  2

• Warning about NCIT version

  #143 opened 2 years ago by bgyori
  0

• Issue when trying to retrieve a specific version of `HGNC`

  #136 opened 2 years ago by DimitrisAlivas
  1

• FTP error when downloading PFAM

  #139 opened 2 years ago by cmungall
  4

• Download fails on Anopheles gambiae

  #133 opened 2 years ago by kkaris
  1

• hgnc ingest fails with illegal prefix?

  #123 opened 3 years ago by matentzn
  9

• Antibody registry

  #108 opened 3 years ago by cthoyt
  0

• Get unavailable ontologies from OntoBee endpoint

  #126 opened 3 years ago by cthoyt
  0

• WHO Resources

  #125 opened 3 years ago by cthoyt
  0

• How similar are model organism nomenclatures?

  #119 opened 3 years ago by cthoyt
  0

• Enable usage of chembl database while zipped

  #102 opened 3 years ago by cthoyt
  0

• SwissLipids

  #106 opened 3 years ago by cthoyt
  0

• Interpro parsing issue

  #115 opened 3 years ago by bgyori
  0

• Add signor names

  #107 opened 4 years ago by cthoyt
  0

• Add uniprot names to ooh na na

  #104 opened 4 years ago by cthoyt
  1

• UniProt subcellular locations

  #103 opened 4 years ago by cthoyt
  0

• Fix drugbank synonym loading

  #101 opened 4 years ago by cthoyt
  0

• PTMsigDB

  #100 opened 4 years ago by cthoyt
  0

• Gene Ontology alternative identifiers don't make it to the database build

  #99 opened 4 years ago by cthoyt
  0

• PharmGKB

  #94 opened 4 years ago by cthoyt
  0

• ONCOTREE xrefs

  #92 opened 4 years ago by cthoyt
  0