biopragmatics/pyobo

Issues

• include EC mappings in rhea release

  #358 opened a month ago by cmungall
  2

• Add definitions for EC entries

  #359 opened a month ago by cmungall
  0

• Make it clear that the eccode artefact is derived from expasy and not enzyme-database org

  #186 opened 10 months ago by cmungall
  2

• eccode ingest has some incorrect labels

  #360 opened a month ago by cmungall
  2

• Comments in provenance

  #354 opened 2 months ago by cthoyt
  0

• Inconsistent IRIs Between eccode and rhea Sources

  #349 opened 2 months ago by jplfaria
  2

• Auto-URI for `foaf:depicted_by` and `foaf:depiction`

  #352 opened 2 months ago by cthoyt
  0

• Use consistent PURLs in the distributed OWL files

  #333 opened 2 months ago by cmungall
  2

• KEGG Orthology (inquiry)

  #332 opened 2 months ago by jplfaria
  3

• Language support for OBO literals and synonyms

  #323 opened 3 months ago by cthoyt
  0

• Dependency issue with requests_ftp

  #265 opened 4 months ago by bgyori
  1

• Add datatypes to properties

  #174 opened 4 months ago by cthoyt
  0

• Error while trying to write `ncbigene.obo` via pyobo

  #179 opened 4 months ago by hrshdhgd
  1

• GARD

  #260 opened 4 months ago by cthoyt
  0

• Adding other ontolo-dbs

  #194 opened 4 months ago by ialarmedalien
  6

• possibilities to extend content for OBODB UniProt

  #172 opened a year ago by realmarcin
  5

• Python 3.12 compatibility

  #190 opened 6 months ago by kkaris
  1

• Include transferred entries (but marked as obsolete)

  #187 opened 10 months ago by cmungall
  0

• Intermittent error when trying to get name by curie

  #185 opened a year ago by kkaris
  1

• Add descriptions to uniprot

  #117 opened a year ago by cthoyt
  0

• Providing explicit version for `pyobo.get_name_by_curie` still calls `bioversions.get_version`

  #183 opened a year ago by kkaris
  0

• Retain deleted ECs but as an obsolete record

  #178 opened a year ago by cmungall
  0

• Add more metadata to EC entries

  #177 opened a year ago by cmungall
  0

• rhea ETL does not add labels for directional forms

  #169 opened a year ago by cmungall
  3

• Add participants to Rhea import

  #167 opened a year ago by cmungall
  3

• Annotate genes in FlyBase with SO terms

  #165 opened a year ago by cthoyt
  0

• Use preferred prefixes when outputting OBO Format

  #161 opened a year ago by cmungall
  0

• Grab ICD-10 to ICD-11 mapping table

  #128 opened a year ago by cthoyt
  1

• Unidecode Error

  #150 opened a year ago by Crispae
  8

• Include overlaps relationship in interpro ingest

  #162 opened a year ago by cmungall
  0

• Annotate genes in HGNC with SO terms

  #118 opened 4 years ago by cthoyt
  4

• New sources for funders

  #157 opened 2 years ago by cthoyt
  0

• `pyobo.get_sssom_df()` for UMLS returns `prefix:PREFIX:ID`

  #155 opened 2 years ago by hrshdhgd
  1

• Turn off name lookup in SSSOM export

  #153 opened 2 years ago by cthoyt
  0

• coordinate with SIB on conversion of swisslipids

  #140 opened 2 years ago by cmungall
  10

• Unzipping resource file fails with EOFError

  #148 opened 2 years ago by kkaris
  0

• coordinate with SIB on conversion of EC

  #146 opened 2 years ago by cmungall
  0

• Improve support for default namespace when parsing OBO

  #145 opened 2 years ago by cthoyt
  0

• Errors related to robot conversion of vo

  #144 opened 2 years ago by bgyori
  1

• Error processing EMAPA

  #142 opened 2 years ago by bgyori
  2

• Warning about NCIT version

  #143 opened 2 years ago by bgyori
  0

• Issue when trying to retrieve a specific version of `HGNC`

  #136 opened 2 years ago by DimitrisAlivas
  1

• FTP error when downloading PFAM

  #139 opened 2 years ago by cmungall
  4

• Download fails on Anopheles gambiae

  #133 opened 3 years ago by kkaris
  1

• hgnc ingest fails with illegal prefix?

  #123 opened 3 years ago by matentzn
  9

• Antibody registry

  #108 opened 3 years ago by cthoyt
  0

• Get unavailable ontologies from OntoBee endpoint

  #126 opened 3 years ago by cthoyt
  0

• WHO Resources

  #125 opened 3 years ago by cthoyt
  0

• How similar are model organism nomenclatures?

  #119 opened 4 years ago by cthoyt
  0

• Interpro parsing issue

  #115 opened 4 years ago by bgyori
  0