Pinned Repositories
biolookup
🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.
biomappings
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
bioontologies
🏷️ Unified access to biomedical ontologies
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
bioversions
🪝 What's the latest version for each database?
curies
🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python
obo-db-ingest
🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
oquat
🎬 Ontology Quality Assesment Toolkit
pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
semra
🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings
Biopragmatics Stack's Repositories
biopragmatics/bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
biopragmatics/pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
biopragmatics/biomappings
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
biopragmatics/bioversions
🪝 What's the latest version for each database?
biopragmatics/curies
🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python
biopragmatics/bioontologies
🏷️ Unified access to biomedical ontologies
biopragmatics/obo-db-ingest
🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
biopragmatics/oquat
🎬 Ontology Quality Assesment Toolkit
biopragmatics/semra
🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings
biopragmatics/curies.rs
🦀 Idiomatic conversion between URIs and compact URIs (CURIEs) in Rust
biopragmatics/biolookup
🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.
biopragmatics/biolexica
📘 Generate and apply coherent biomedical lexical indices for NER and NEN
biopragmatics/biolookup-docker
🐋 A dockerfile for the frontend to the Biolookup Service
biopragmatics/biopragmatics.github.io
GitHub site for the Biopragmatics Stack
biopragmatics/bioregistry-docker
🐋 A dockerfile for the Bioregistry web app
biopragmatics/biosynonyms
☎️ A decentralized database of synonyms for biomedical concepts
biopragmatics/debio
🥮 Decentralized Biomedical Ontology
biopragmatics/.github
biopragmatics/providers
🌐 Providers for prefixes that don't have one, but are available in PyOBO