althonos/pronto

Issues

• Unable to create Pronto object since 2.5.6 (synonyms change)

  #219 opened 9 months ago by Zethson
  2

• Pronto is not parsing implicit string annotations

  #231 opened 3 months ago by CarMoreno
  1

• Is it possible to write OWL?

  #232 opened 3 months ago by sorenwacker
  1

• How to access property_value tags?

  #227 opened 7 months ago by chrishmorris
  1

• Adding annotations to synonym type declarations yields KeyError: '{http://www.w3.org/1999/02/22-rdf-syntax-ns#}resource

  #230 opened 4 months ago by cmungall
  1

• `ValueError: undeclared synonym type` with version 2.5.7

  #229 opened 5 months ago by ireneisdoomed
  0

• Move to conda-forge

  #228 opened 7 months ago by Zethson
  0

• Potential bug | ValueError: identifier already in use when loading MONDO ontology

  #216 opened 7 months ago by Odessit007
  1

• isa: DANGLING:123 causes parse error

  #226 opened 7 months ago by matentzn
  2

• Support dangling classes

  #225 opened 8 months ago by cmungall
  0

• Is there a way to adjust the obo parsing strictness?

  #159 opened 3 years ago by mwalzer
  4

• Error processing OWL

  #222 opened 8 months ago by chrishmorris
  1

• Dump as OWL

  #149 opened 3 years ago by cthoyt
  6

• Conda installation not downloading latest version and not working with latest version

  #224 opened 9 months ago by Vedanth-Ramji
  0

• How to get cross-references descriptions?

  #220 opened 9 months ago by CarMoreno
  1

• Pronto fails to load OPMI by inferring wrong encoding

  #221 opened 9 months ago by ElDeveloper
  0

• Impossible getting synonym type

  #218 opened 10 months ago by CarMoreno
  4

• ValueError: could not find owl:Ontology element

  #214 opened 10 months ago by h-mayorquin
  2

• Feature Request: Support for Python 3.12

  #217 opened 10 months ago by theArsalanM
  1

• The "replaced by" terms are not extracted in certain situations

  #169 opened a year ago by tskir
  3

• NotImplementedWarning: cannot process plain `owl:AnnotationProperty` cls(self).parse_from(_handle) # type: ignore

  #198 opened 2 years ago by CarMoreno
  1

• Update requirements for NetworkX

  #206 opened 2 years ago by gaetandi
  3

• Is there a way to `term.remove_synonym("something")` ?

  #207 opened 2 years ago by hrshdhgd
  2

• ValueError: could not find a parser to parse 'http://purl.obolibrary.org/obo/doid/obo/ext.owl' when parsing human disease ontology

  #202 opened 2 years ago by Zethson
  2

• cell ontology cl.obo error

  #201 opened 2 years ago by noamiz5060
  1

• Accessing children of a relationship

  #177 opened 3 years ago by manulera
  3

• Obtain ontology subgraph

  #194 opened 2 years ago by maarten-devries
  0

• Finding parent terms from IDs in OWL objects

  #191 opened 2 years ago by dgolden96
  2

• invalid datatype: 'http://www.w3.org/2000/01/rdf-schema#Literal' when parsing foodon

  #187 opened 2 years ago by cmungall
  2

• Add supports for catalogs in imports

  #186 opened 2 years ago by cmungall
  1

• Cannot import gene ontology

  #165 opened 3 years ago by manulera
  3

• How we can parse individulas (instances) and datatype properties using pronto?

  #185 opened 2 years ago by ali3assi
  1

• How to extract all the terms from all the properties and the instances in a ontology?

  #184 opened 2 years ago by ali3assi
  0

• Cannot install latest version in new virtual environment

  #182 opened 2 years ago by pkalita-lbl
  3

• Consider adding kgcl bindings

  #180 opened 2 years ago by cmungall
  0

• AttributeError: module 'fastobo.typedef' has no attribute 'IsClassLevel' when saving obo file

  #178 opened 2 years ago by cmungall
  1

• Latest hp.owl fails due to SynonymTypeProperty w/o label with AttributeError: 'NoneType' object has no attribute 'text'

  #176 opened 2 years ago by davmlaw
  1

• BaseIdent TypeError when saving obo files with property chains

  #175 opened 3 years ago by cmungall
  1

• Getting Relationships

  #174 opened 3 years ago by krishanudb
  3

• How to hide logging

  #173 opened 3 years ago by cthoyt
  3

• module 'fastobo.typedef' has no attribute 'IsMetadataClause'

  #164 opened 3 years ago by cmungall
  2

• Bioconda doesn't install latest Pronto

  #162 opened 3 years ago by ireneisdoomed
  1

• It should be possible to filter out relationships based on GCIs

  #163 opened 3 years ago by cmungall
  1

• CL has KeyError: 'CARO:0000000'

  #156 opened 3 years ago by quirinmanz
  4

• Loading ontologies fails (for me) in 2.4.4

  #158 opened 3 years ago by mwalzer
  3

• How to parse Orphanet OWL file (new version 4.0) part_of relationship

  #153 opened 3 years ago by LM-Ontologies
  0

• OBO parsing fails with a misleading error message

  #146 opened 3 years ago by mukund109
  1

• Documentation is missing `term.relationships` attribute

  #145 opened 3 years ago by mukund109
  1

• Error parsing `aro.owl` (identifier already in use)

  #140 opened 4 years ago by althonos
  0

• Add `obofoundry` topic

  #139 opened 4 years ago by cthoyt
  1