Pinned Repositories
airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
annotation_models
batch-minimal-example
bluetooth-sync
cache-genetic-evidence
cnvkit
Copy number variant detection from targeted DNA sequencing
CWL_viral_pipeline
nextflow
A DSL for data-driven computational pipelines
vimeo-audio-video
Download segmented video from Vimeo
tskir's Repositories
tskir/vimeo-audio-video
Download segmented video from Vimeo
tskir/nextflow
A DSL for data-driven computational pipelines
tskir/airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
tskir/Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
tskir/annotation_models
tskir/batch-minimal-example
tskir/bluetooth-sync
tskir/cache-genetic-evidence
tskir/cnvkit
Copy number variant detection from targeted DNA sequencing
tskir/CWL_viral_pipeline
tskir/ebi-playground
Small snippets of code for the EBI
tskir/epmc-ambiguity
tskir/eva-opentargets
Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets
tskir/eva-web
Web front-end for the European Variation Archive
tskir/google-location-history
tskir/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
tskir/json_schema
Open Targets target-disease association schema
tskir/llm-experiments
tskir/metadata-ws
Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)
tskir/mutation-pairs
tskir/opentargets-test
tskir/read_alignment
tskir/unix
tskir/validator
tskir/vep-mapping-pipeline
A pipeline which uses Ensembl VEP REST API to map input variants to their most severe functional consequence and gene information