EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

Pinned Repositories

CMPO
Cellular Microscopy Phenotype Ontology
Language:Python6 15 72
DUO
Ontology for consent codes and data use requirements
Language:Makefile62 18 10515
efo
Github repo for the Experimental Factor Ontology (EFO)
Language:Makefile54 14 1.6k14
goci
GWAS Catalog Ontology and Curation Infrastructure
Language:Java26 10 1.1k19
gwas-sumstats-harmoniser
GWAS Summary Statistics Data Harmonisation
Language:Python18 4 439
lodestar
Linked Data explorer and SPARQL endpoint
Language:JavaScript23 11 2822
OLS
Ontology Lookup Service from SPOT at EBI
Language:JavaScript95 20 56940
ols4
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
Language:Java34 11 44615
OXO
Ontology cross-reference and mapping service
Language:JavaScript16 11 606
zooma
ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.
Language:Java23 18 6511

EBISPOT's Repositories

EBISPOT/efo
Github repo for the Experimental Factor Ontology (EFO)
Language:Makefile54 14 1.6k14
EBISPOT/ols4
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
Language:Java34 11 44615
EBISPOT/goci
GWAS Catalog Ontology and Curation Infrastructure
Language:Java26 10 1.1k19
EBISPOT/zooma
ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.
Language:Java23 18 6511
EBISPOT/gwas-sumstats-harmoniser
GWAS Summary Statistics Data Harmonisation
Language:Python18 4 439
EBISPOT/OXO
Ontology cross-reference and mapping service
Language:JavaScript16 11 606
EBISPOT/gwas-sumstats-tools
Language:Python7 10 91
EBISPOT/gwas-utils
Collection of tools and scripts to manage GWAS Catalog related infrastructure.
Language:Python6 11 382
EBISPOT/hancestro
Language:Makefile6 9 382
EBISPOT/gwas-ui
Language:JavaScript5 9 844
EBISPOT/ontotools-docker
Configuration to deploy ontotools using docker compose
Language:Shell4 5 810
EBISPOT/otar_profiler
Pipeline for creating Open Targets profile and slim files from EFO.
Language:Ruby4 14 0
EBISPOT/scatlas_ontology
SCA_Ontology
Language:Makefile4 5 182
EBISPOT/gwas-sumstats-service
Summary statistics service
Language:Python2 5 840
EBISPOT/EFO-website
Source code for the EFO website at http://www.ebi.ac.uk/efo
Language:HTML1 11 1
EBISPOT/GrEBI
HPC pipeline for building integrated knowledge graphs from EBI resources
Language:Rust1 6 0
EBISPOT/ictv-ontology
Language:Python11
EBISPOT/scxa_2_cxg
Language:Python1
EBISPOT/eshg-2024-workshop
Workshop material for the European Human Genetics Conference 2024
Language:HTML
EBISPOT/gwas-curation-service
Language:Java7 66
EBISPOT/gwas-curation-ui
The New Curation Front End interface for the GWAS Catalog
Language:TypeScript4 18
EBISPOT/gwas-data-commons
This repo will be having common components used across multiple services
Language:Java
EBISPOT/gwas-data-services
Language:Java6 7
EBISPOT/gwas-sumstats-tools-documentation
Documentation to gwas-sumstats-tools
Language:HTML
EBISPOT/gwas-sumstats-tools-ssf-morph
Format gwas summary statistic data into gwas-ssf
Language:JavaScript
EBISPOT/gwasdepo-audit-service
Language:Java
EBISPOT/gwasdepo-commons
Language:Java4 2
EBISPOT/gwasdepo-deposition-service
Language:Java4 311
EBISPOT/gwasdepo-ingest-service
Language:Java4 3
EBISPOT/scxa_kg
Language:Python