Issues
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[FEATURE]: Better handling for user-input sumstats
#101 opened by smlmbrt - 1
Improve the Error log
#104 opened by jiyue1214 - 1
Handling z-score in sumstat
#103 opened by jiyue1214 - 9
Harmonizing the studies from PMID: 37156999
#100 opened by jiyue1214 - 0
Improve the harmonisation pipeline efficiency
#105 opened by jiyue1214 - 5
Handling the ci_upper and ci_lower
#97 opened by jiyue1214 - 3
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Set bug report template which can guide user to provide more precise error message
#93 opened by jiyue1214 - 0
update qc to handle new standard
#64 opened by jdhayhurst - 1
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Add step to normalise variants
#30 opened by jdhayhurst - 1
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Setup the nextflow tower
#87 opened by jiyue1214 - 4
test it on a minimal dataset with a single command
#77 opened by yuj23 - 3
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Test on minimal dataset failing
#84 opened by briansha - 2
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liftover with specified coordinate system
#70 opened by jdhayhurst - 4
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pipeline reads build from metadata
#49 opened by jdhayhurst - 0
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Review latest harmonisation developments
#38 opened by jdhayhurst - 1
refactor configs
#41 opened by jdhayhurst - 13
After harmonisation, if file could not be harmonised, produce a short report to explain why
#24 opened by jdhayhurst - 1
Annotate variants with "mapping method"
#43 opened by jdhayhurst - 2
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tabix harmonised sumstats files
#18 opened by jdhayhurst - 0
0 beta values are converted to NA in hm_beta
#53 opened by jdhayhurst - 0
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allow for different delimiters in inputs
#66 opened by jdhayhurst - 0
Dynamically set groupTuple size param
#58 opened by jdhayhurst - 1
Query over GCST90010715 harmonisation
#51 opened by jinghuazhao - 1
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Improve efficiency of pipeline
#19 opened by jdhayhurst - 1
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Merge in OTAR harmoniser
#25 opened by jdhayhurst - 0
Need to QC non-rsID type variant IDs
#14 opened by jdhayhurst - 0
- 2
duplicated rows in output
#10 opened by jdhayhurst - 2
Check that these codes are represented in the harmonised data: 14, 15, 16, and 9
#11 opened by jdhayhurst - 0
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