Pinned Repositories
CMPO
Cellular Microscopy Phenotype Ontology
DUO
Ontology for consent codes and data use requirements
efo
Github repo for the Experimental Factor Ontology (EFO)
goci
GWAS Catalog Ontology and Curation Infrastructure
gwas-sumstats-harmoniser
GWAS Summary Statistics Data Harmonisation
lodestar
Linked Data explorer and SPARQL endpoint
OLS
Ontology Lookup Service from SPOT at EBI
ols4
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
OXO
Ontology cross-reference and mapping service
zooma
ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.
EBISPOT's Repositories
EBISPOT/EFO-UKB-mappings
EBISPOT/CMPO
Cellular Microscopy Phenotype Ontology
EBISPOT/EJP-Ontology
An ontological model for describing resources for Rare Diseases catalogs including registries, biobanks, research infrastructures, genomes-phenome repositories, method standards, etc.
EBISPOT/OLS-treeview
This is the standalone widget for the OLS treeview
EBISPOT/OLS-autocomplete
Stand alone auto complete widget for ontologies using the Ontology Lookup Service (OLS)
EBISPOT/ga4gh-biosamples
A test implementation for development of the GA4GH API over BioSamples.
EBISPOT/ICBO2017
The SPOT Ontology Toolkit - Tutorial for ICBO 2017
EBISPOT/OLS-docker
EBISPOT/biosamples-facet-concurrence
EBISPOT/gwas-deposition-app
EBISPOT/ols-tabbed-term-treeview
EBISPOT/ols-term-type-treeview
EBISPOT/slim-o-matic
A semi-automated tool for GO slimming
EBISPOT/annotare-validator
A validation script to ensure Annotare are informed of any important term changes.
EBISPOT/biosamples-analysis
Contains python scripts and cypher to read BioSamples info from Solr, store in Neo4J database
EBISPOT/biosamples-data-curation
A repository containing scripts/ideas/documents for semi-automated cleanup of the EBI Biosamples data.
EBISPOT/cell_finder
EBISPOT/cmpo-web-ols
web pages for the CMPO website
EBISPOT/diachron_ols
EBISPOT/gwas-associationFilter
EBISPOT/icbo-ontologies-workshop
Material for the ICBO workshop on SPOT ontology tools
EBISPOT/logos
Logos for spot tools
EBISPOT/ols-client
Java ols client designed for OLS-Dialog tool
EBISPOT/ols-embassy
Jupyter notebook describing steps to set up a custom instance of OLS on EMBL/EBI Embassy Cloud
EBISPOT/ontology-extractor
A tool to extract a list of ontology terms for importing into another ontology given parents are provided.
EBISPOT/ontomapper
Regenerate and enrich the GWAS spreadsheet by mapping EFO terms to outside ontologies
EBISPOT/scATLAS
Single Cell Atlas Ontology
EBISPOT/Semantics-for-EGA
The semantic model for rare disease in EGA resources
EBISPOT/urigen
Automatically exported from code.google.com/p/urigen
EBISPOT/urigen-id-generator
Script that takes a set of new ontology terms and runs them through Urigen to batch-generated IDs